| 175 |
|
|
| 176 |
|
NPTim ( SimInfo *theInfo, ForceFields* the_ff); |
| 177 |
|
virtual ~NPTim() {}; |
| 178 |
+ |
|
| 179 |
+ |
virtual void integrateStep( int calcPot, int calcStress ){ |
| 180 |
+ |
calcStress = 1; |
| 181 |
+ |
T::integrateStep( calcPot, calcStress ); |
| 182 |
+ |
} |
| 183 |
+ |
|
| 184 |
+ |
void setTauThermostat(double tt) {tauThermostat = tt; have_tau_thermostat=1;} |
| 185 |
+ |
void setTauBarostat(double tb) {tauBarostat = tb; have_tau_barostat=1;} |
| 186 |
+ |
void setTargetTemp(double tt) {targetTemp = tt; have_target_temp = 1;} |
| 187 |
+ |
void setTargetPressure(double tp) {targetPressure = tp; have_target_pressure = 1;} |
| 188 |
+ |
|
| 189 |
+ |
protected: |
| 190 |
+ |
|
| 191 |
+ |
virtual void moveA( void ); |
| 192 |
+ |
virtual void moveB( void ); |
| 193 |
+ |
|
| 194 |
+ |
virtual int readyCheck(); |
| 195 |
+ |
|
| 196 |
+ |
virtual void resetIntegrator( void ); |
| 197 |
+ |
|
| 198 |
+ |
Molecule* myMolecules; |
| 199 |
+ |
Atom** myAtoms; |
| 200 |
+ |
|
| 201 |
+ |
// chi and eta are the propagated degrees of freedom |
| 202 |
+ |
|
| 203 |
+ |
double chi; |
| 204 |
+ |
double eta; |
| 205 |
+ |
double NkBT; |
| 206 |
|
|
| 207 |
+ |
// targetTemp, targetPressure, and tauBarostat must be set. |
| 208 |
+ |
// One of qmass or tauThermostat must be set; |
| 209 |
+ |
|
| 210 |
+ |
double targetTemp; |
| 211 |
+ |
double targetPressure; |
| 212 |
+ |
double tauThermostat; |
| 213 |
+ |
double tauBarostat; |
| 214 |
+ |
|
| 215 |
+ |
short int have_tau_thermostat, have_tau_barostat, have_target_temp; |
| 216 |
+ |
short int have_target_pressure; |
| 217 |
+ |
|
| 218 |
+ |
}; |
| 219 |
+ |
|
| 220 |
+ |
template<typename T> class NPTzm : public T{ |
| 221 |
+ |
|
| 222 |
+ |
public: |
| 223 |
+ |
|
| 224 |
+ |
NPTzm ( SimInfo *theInfo, ForceFields* the_ff); |
| 225 |
+ |
virtual ~NPTzm() {}; |
| 226 |
+ |
|
| 227 |
|
virtual void integrateStep( int calcPot, int calcStress ){ |
| 228 |
|
calcStress = 1; |
| 229 |
|
T::integrateStep( calcPot, calcStress ); |
| 250 |
|
|
| 251 |
|
double chi; |
| 252 |
|
double eta; |
| 253 |
+ |
double etaZ; |
| 254 |
|
double NkBT; |
| 255 |
|
|
| 256 |
|
// targetTemp, targetPressure, and tauBarostat must be set. |
| 296 |
|
|
| 297 |
|
double chi; |
| 298 |
|
double eta[3][3]; |
| 299 |
+ |
double NkBT; |
| 300 |
+ |
|
| 301 |
+ |
// targetTemp, targetPressure, and tauBarostat must be set. |
| 302 |
+ |
// One of qmass or tauThermostat must be set; |
| 303 |
+ |
|
| 304 |
+ |
double targetTemp; |
| 305 |
+ |
double targetPressure; |
| 306 |
+ |
double tauThermostat; |
| 307 |
+ |
double tauBarostat; |
| 308 |
+ |
|
| 309 |
+ |
short int have_tau_thermostat, have_tau_barostat, have_target_temp; |
| 310 |
+ |
short int have_target_pressure; |
| 311 |
+ |
|
| 312 |
+ |
}; |
| 313 |
+ |
|
| 314 |
+ |
template<typename T> class NPTxym : public T{ |
| 315 |
+ |
|
| 316 |
+ |
public: |
| 317 |
+ |
|
| 318 |
+ |
NPTxym ( SimInfo *theInfo, ForceFields* the_ff); |
| 319 |
+ |
virtual ~NPTxym() {}; |
| 320 |
+ |
|
| 321 |
+ |
virtual void integrateStep( int calcPot, int calcStress ){ |
| 322 |
+ |
calcStress = 1; |
| 323 |
+ |
T::integrateStep( calcPot, calcStress ); |
| 324 |
+ |
} |
| 325 |
+ |
|
| 326 |
+ |
void setTauThermostat(double tt) {tauThermostat = tt; have_tau_thermostat=1;} |
| 327 |
+ |
void setTauBarostat(double tb) {tauBarostat = tb; have_tau_barostat=1;} |
| 328 |
+ |
void setTargetTemp(double tt) {targetTemp = tt; have_target_temp = 1;} |
| 329 |
+ |
void setTargetPressure(double tp) {targetPressure = tp; have_target_pressure = 1;} |
| 330 |
+ |
|
| 331 |
+ |
protected: |
| 332 |
+ |
|
| 333 |
+ |
virtual void moveA( void ); |
| 334 |
+ |
virtual void moveB( void ); |
| 335 |
+ |
|
| 336 |
+ |
virtual int readyCheck(); |
| 337 |
+ |
|
| 338 |
+ |
virtual void resetIntegrator( void ); |
| 339 |
+ |
|
| 340 |
+ |
Molecule* myMolecules; |
| 341 |
+ |
Atom** myAtoms; |
| 342 |
+ |
|
| 343 |
+ |
// chi and eta are the propagated degrees of freedom |
| 344 |
+ |
|
| 345 |
+ |
double chi; |
| 346 |
+ |
double eta; |
| 347 |
+ |
double etaX; |
| 348 |
+ |
double etaY; |
| 349 |
|
double NkBT; |
| 350 |
|
|
| 351 |
|
// targetTemp, targetPressure, and tauBarostat must be set. |
| 361 |
|
|
| 362 |
|
}; |
| 363 |
|
|
| 364 |
+ |
|
| 365 |
|
template<typename T> class NPTfm : public T{ |
| 366 |
|
|
| 367 |
|
public: |