| 80 |
|
|
| 81 |
|
if( !strcmp( info.name, name ) ){ |
| 82 |
|
sprintf( painCave.errMsg, |
| 83 |
< |
"Duplicate LJ atom type \"%s\" found in " |
| 84 |
< |
"the LJ_FF param file./n", |
| 83 |
> |
"Duplicate EAM atom type \"%s\" found in " |
| 84 |
> |
"the EAM_FF param file./n", |
| 85 |
|
name ); |
| 86 |
|
painCave.isFatal = 1; |
| 87 |
|
simError(); |
| 155 |
|
// begins the actual forcefield stuff. |
| 156 |
|
//**************************************************************** |
| 157 |
|
|
| 158 |
+ |
EAM_FF::EAM_FF() { |
| 159 |
+ |
EAM_FF(""); |
| 160 |
+ |
} |
| 161 |
|
|
| 162 |
< |
EAM_FF::EAM_FF(){ |
| 162 |
> |
EAM_FF::EAM_FF(char* the_variant){ |
| 163 |
|
|
| 164 |
|
char fileName[200]; |
| 165 |
|
char* ffPath_env = "FORCE_PARAM_PATH"; |
| 204 |
|
if( worldRank == 0 ){ |
| 205 |
|
#endif |
| 206 |
|
|
| 207 |
< |
// generate the force file name |
| 208 |
< |
|
| 209 |
< |
strcpy( fileName, "EAM_FF.frc" ); |
| 210 |
< |
// fprintf( stderr,"Trying to open %s\n", fileName ); |
| 207 |
> |
// generate the force file name |
| 208 |
> |
|
| 209 |
> |
strcpy( fileName, "EAM" ); |
| 210 |
> |
|
| 211 |
> |
if (strlen(the_variant) > 0) { |
| 212 |
> |
has_variant = 1; |
| 213 |
> |
strcpy( variant, the_variant); |
| 214 |
> |
strcat( fileName, "."); |
| 215 |
> |
strcat( fileName, variant ); |
| 216 |
> |
|
| 217 |
> |
sprintf( painCave.errMsg, |
| 218 |
> |
"Using %s variant of EAM force field.\n", |
| 219 |
> |
variant ); |
| 220 |
> |
painCave.severity = OOPSE_INFO; |
| 221 |
> |
painCave.isFatal = 0; |
| 222 |
> |
simError(); |
| 223 |
> |
} |
| 224 |
> |
strcat( fileName, ".frc"); |
| 225 |
> |
|
| 226 |
> |
//fprintf( stderr,"Trying to open %s\n", fileName ); |
| 227 |
|
|
| 228 |
|
// attempt to open the file in the current directory first. |
| 229 |
|
|
| 247 |
|
frcFile = fopen( fileName, "r" ); |
| 248 |
|
|
| 249 |
|
if( frcFile == NULL ){ |
| 250 |
< |
|
| 250 |
> |
|
| 251 |
|
sprintf( painCave.errMsg, |
| 252 |
< |
"Error opening the force field parameter file: %s\n" |
| 253 |
< |
"Have you tried setting the FORCE_PARAM_PATH environment " |
| 254 |
< |
"vairable?\n", |
| 252 |
> |
"Error opening the force field parameter file:\n" |
| 253 |
> |
"\t%s\n" |
| 254 |
> |
"\tHave you tried setting the FORCE_PARAM_PATH environment " |
| 255 |
> |
"variable?\n", |
| 256 |
|
fileName ); |
| 257 |
+ |
painCave.severity = OOPSE_ERROR; |
| 258 |
|
painCave.isFatal = 1; |
| 259 |
|
simError(); |
| 260 |
|
} |
| 261 |
|
} |
| 262 |
+ |
|
| 263 |
|
|
| 264 |
|
#ifdef IS_MPI |
| 265 |
|
} |
| 339 |
|
// read in the atom types. |
| 340 |
|
|
| 341 |
|
headAtomType = new LinkedAtomType; |
| 342 |
< |
|
| 342 |
> |
|
| 343 |
|
fastForward( "AtomTypes", "eam atom readParams" ); |
| 344 |
|
|
| 345 |
|
// we are now at the AtomTypes section. |
| 749 |
|
sprintf( painCave.errMsg, |
| 750 |
|
"Error opening the EAM force parameter file: %s\n" |
| 751 |
|
"Have you tried setting the FORCE_PARAM_PATH environment " |
| 752 |
< |
"vairable?\n", |
| 752 |
> |
"variable?\n", |
| 753 |
|
eamPotFile ); |
| 754 |
|
painCave.isFatal = 1; |
| 755 |
|
simError(); |
| 783 |
|
|
| 784 |
|
if ( (the_token = strtok( eam_read_buffer, " \n\t,;")) == NULL){ |
| 785 |
|
sprintf( painCave.errMsg, |
| 786 |
< |
"Error parseing EAM ident line in %s\n", eamPotFile ); |
| 786 |
> |
"Error parsing EAM ident line in %s\n", eamPotFile ); |
| 787 |
|
painCave.isFatal = 1; |
| 788 |
|
simError(); |
| 789 |
|
} |
| 792 |
|
|
| 793 |
|
if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){ |
| 794 |
|
sprintf( painCave.errMsg, |
| 795 |
< |
"Error parseing EAM mass in %s\n", eamPotFile ); |
| 795 |
> |
"Error parsing EAM mass in %s\n", eamPotFile ); |
| 796 |
|
painCave.isFatal = 1; |
| 797 |
|
simError(); |
| 798 |
|
} |
| 800 |
|
|
| 801 |
|
if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){ |
| 802 |
|
sprintf( painCave.errMsg, |
| 803 |
< |
"Error parseing EAM Lattice Constant %s\n", eamPotFile ); |
| 803 |
> |
"Error parsing EAM Lattice Constant %s\n", eamPotFile ); |
| 804 |
|
painCave.isFatal = 1; |
| 805 |
|
simError(); |
| 806 |
|
} |
| 826 |
|
|
| 827 |
|
if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){ |
| 828 |
|
sprintf( painCave.errMsg, |
| 829 |
< |
"Error parseing EAM drho in %s\n", eamPotFile ); |
| 829 |
> |
"Error parsing EAM drho in %s\n", eamPotFile ); |
| 830 |
|
painCave.isFatal = 1; |
| 831 |
|
simError(); |
| 832 |
|
} |
| 834 |
|
|
| 835 |
|
if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){ |
| 836 |
|
sprintf( painCave.errMsg, |
| 837 |
< |
"Error parseing EAM # r in %s\n", eamPotFile ); |
| 837 |
> |
"Error parsing EAM # r in %s\n", eamPotFile ); |
| 838 |
|
painCave.isFatal = 1; |
| 839 |
|
simError(); |
| 840 |
|
} |
| 842 |
|
|
| 843 |
|
if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){ |
| 844 |
|
sprintf( painCave.errMsg, |
| 845 |
< |
"Error parseing EAM dr in %s\n", eamPotFile ); |
| 845 |
> |
"Error parsing EAM dr in %s\n", eamPotFile ); |
| 846 |
|
painCave.isFatal = 1; |
| 847 |
|
simError(); |
| 848 |
|
} |
| 850 |
|
|
| 851 |
|
if( ( the_token = strtok( NULL, " \n\t,;" ) ) == NULL ){ |
| 852 |
|
sprintf( painCave.errMsg, |
| 853 |
< |
"Error parseing EAM rcut in %s\n", eamPotFile ); |
| 853 |
> |
"Error parsing EAM rcut in %s\n", eamPotFile ); |
| 854 |
|
painCave.isFatal = 1; |
| 855 |
|
simError(); |
| 856 |
|
} |
| 891 |
|
// Value 1 |
| 892 |
|
if ( (the_token = strtok( eam_read_buffer, " \n\t,;")) == NULL){ |
| 893 |
|
sprintf( painCave.errMsg, |
| 894 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 894 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 895 |
|
painCave.isFatal = 1; |
| 896 |
|
simError(); |
| 897 |
|
} |
| 901 |
|
// Value 2 |
| 902 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 903 |
|
sprintf( painCave.errMsg, |
| 904 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 904 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 905 |
|
painCave.isFatal = 1; |
| 906 |
|
simError(); |
| 907 |
|
} |
| 911 |
|
// Value 3 |
| 912 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 913 |
|
sprintf( painCave.errMsg, |
| 914 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 914 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 915 |
|
painCave.isFatal = 1; |
| 916 |
|
simError(); |
| 917 |
|
} |
| 921 |
|
// Value 4 |
| 922 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 923 |
|
sprintf( painCave.errMsg, |
| 924 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 924 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 925 |
|
painCave.isFatal = 1; |
| 926 |
|
simError(); |
| 927 |
|
} |
| 931 |
|
// Value 5 |
| 932 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 933 |
|
sprintf( painCave.errMsg, |
| 934 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 934 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 935 |
|
painCave.isFatal = 1; |
| 936 |
|
simError(); |
| 937 |
|
} |
| 962 |
|
// Value 1 |
| 963 |
|
if ( (the_token = strtok( eam_read_buffer, " \n\t,;")) == NULL){ |
| 964 |
|
sprintf( painCave.errMsg, |
| 965 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 965 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 966 |
|
painCave.isFatal = 1; |
| 967 |
|
simError(); |
| 968 |
|
} |
| 972 |
|
// Value 2 |
| 973 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 974 |
|
sprintf( painCave.errMsg, |
| 975 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 975 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 976 |
|
painCave.isFatal = 1; |
| 977 |
|
simError(); |
| 978 |
|
} |
| 982 |
|
// Value 3 |
| 983 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 984 |
|
sprintf( painCave.errMsg, |
| 985 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 985 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 986 |
|
painCave.isFatal = 1; |
| 987 |
|
simError(); |
| 988 |
|
} |
| 992 |
|
// Value 4 |
| 993 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 994 |
|
sprintf( painCave.errMsg, |
| 995 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 995 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 996 |
|
painCave.isFatal = 1; |
| 997 |
|
simError(); |
| 998 |
|
} |
| 1002 |
|
// Value 5 |
| 1003 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 1004 |
|
sprintf( painCave.errMsg, |
| 1005 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 1005 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 1006 |
|
painCave.isFatal = 1; |
| 1007 |
|
simError(); |
| 1008 |
|
} |
| 1032 |
|
// Value 1 |
| 1033 |
|
if ( (the_token = strtok( eam_read_buffer, " \n\t,;")) == NULL){ |
| 1034 |
|
sprintf( painCave.errMsg, |
| 1035 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 1035 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 1036 |
|
painCave.isFatal = 1; |
| 1037 |
|
simError(); |
| 1038 |
|
} |
| 1042 |
|
// Value 2 |
| 1043 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 1044 |
|
sprintf( painCave.errMsg, |
| 1045 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 1045 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 1046 |
|
painCave.isFatal = 1; |
| 1047 |
|
simError(); |
| 1048 |
|
} |
| 1052 |
|
// Value 3 |
| 1053 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 1054 |
|
sprintf( painCave.errMsg, |
| 1055 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 1055 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 1056 |
|
painCave.isFatal = 1; |
| 1057 |
|
simError(); |
| 1058 |
|
} |
| 1062 |
|
// Value 4 |
| 1063 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 1064 |
|
sprintf( painCave.errMsg, |
| 1065 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 1065 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 1066 |
|
painCave.isFatal = 1; |
| 1067 |
|
simError(); |
| 1068 |
|
} |
| 1072 |
|
// Value 5 |
| 1073 |
|
if ( (the_token = strtok( NULL, " \n\t,;")) == NULL){ |
| 1074 |
|
sprintf( painCave.errMsg, |
| 1075 |
< |
"Error parseing EAM nrho: line in %s\n", eamPotFile ); |
| 1075 |
> |
"Error parsing EAM nrho: line in %s\n", eamPotFile ); |
| 1076 |
|
painCave.isFatal = 1; |
| 1077 |
|
simError(); |
| 1078 |
|
} |