Adding zsub, a program which can be used to replace atom type for zconstraint into OOPSE
added template stuff to the Maikefile template little changes to some printf format statements
replace c++ header stuff with more portable c header stuff Also, mod file fixes and portability changes Some fortran changes will need to be reversed.
Changed DumpReader to use linked lists instead of a vector. Fixed the makefile to build DumpReader.cpp Removed a comment output in Exclude.cpp Modified DumpWriter and Integrator to write an eor file every time a frame is written. This lets the .eor file represent the last written frame of a simulation.
working on the props code
added the scan function to the DumpReader. It should now save the start of each frame in a vector.
making some changes to read dump files
some initial changes to Dumpwriter and friends to accomadate random file access
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