| 1 | mmeineke | 377 |  | 
| 2 |  |  |  | 
| 3 |  |  | #include "SRI.hpp" | 
| 4 |  |  |  | 
| 5 |  |  |  | 
| 6 |  |  | ConstrainedBond::ConstrainedBond( Atom &a, Atom &b, double constraint ){ | 
| 7 |  |  |  | 
| 8 |  |  | set_atoms( a, b ); | 
| 9 |  |  | constrain( constraint ); | 
| 10 |  |  | d0 = constraint; | 
| 11 |  |  | c_potential_E = 0.0; | 
| 12 |  |  | } | 
| 13 |  |  |  | 
| 14 |  |  |  | 
| 15 | mmeineke | 564 | HarmonicBond::HarmonicBond(Atom &a, Atom &b, double theR0, double theK0 ){ | 
| 16 |  |  |  | 
| 17 |  |  | set_atoms( a, b ); | 
| 18 |  |  | d0 = theR0; | 
| 19 |  |  | k0 = theK0; | 
| 20 |  |  | c_potential_E = 0.0; | 
| 21 |  |  | } | 
| 22 |  |  |  | 
| 23 |  |  |  | 
| 24 |  |  | double HarmonicBond::bond_force( double r_ab ){ | 
| 25 |  |  |  | 
| 26 |  |  | double force; | 
| 27 |  |  | double dr, dr2; | 
| 28 |  |  |  | 
| 29 |  |  | dr = r_ab - d0; | 
| 30 |  |  | dr2 = dr * dr; | 
| 31 |  |  |  | 
| 32 |  |  | c_potential_E = k0 * dr2; | 
| 33 |  |  | force = -2.0 * k0 * dr; | 
| 34 |  |  | return force; | 
| 35 |  |  |  | 
| 36 |  |  | } |