| 1 | 
#include <cmath> | 
| 2 | 
 | 
| 3 | 
#include "SRI.hpp" | 
| 4 | 
#include "simError.h" | 
| 5 | 
 | 
| 6 | 
QuadraticBend::QuadraticBend( Atom &a, Atom &b, Atom &c ){ | 
| 7 | 
 | 
| 8 | 
  set_atoms( a, b, c ); | 
| 9 | 
  c1 = 0.0; | 
| 10 | 
  c2 = 0.0; | 
| 11 | 
  c3 = 0.0; | 
| 12 | 
  theta0 = 0.0; | 
| 13 | 
} | 
| 14 | 
 | 
| 15 | 
void QuadraticBend::setConstants( double the_c1, double the_c2, double the_c3,  | 
| 16 | 
                                  double the_Th0 ){ | 
| 17 | 
  c1 = the_c1; | 
| 18 | 
  c2 = the_c2; | 
| 19 | 
  c3 = the_c3; | 
| 20 | 
  theta0 = the_Th0; | 
| 21 | 
} | 
| 22 | 
 | 
| 23 | 
 | 
| 24 | 
double QuadraticBend::bend_force( double theta ){ | 
| 25 | 
 | 
| 26 | 
  double dt, dt2; | 
| 27 | 
  double force; | 
| 28 | 
 | 
| 29 | 
 | 
| 30 | 
 | 
| 31 | 
 | 
| 32 | 
  dt = ( theta - theta0 ) * M_PI / 180.0; | 
| 33 | 
  dt2 = dt * dt; | 
| 34 | 
 | 
| 35 | 
  c_potential_E = ( c1 * dt2 ) + ( c2 * dt ) + c3; | 
| 36 | 
  force = -( ( 2.0 * c1 * dt ) + c2 ); | 
| 37 | 
  return force; | 
| 38 | 
} |