98 |
|
break; |
99 |
|
|
100 |
|
case ATOM_HEAD: |
101 |
< |
if( the_namespc.type != MOLECULE_HEAD && the_namespc.type != RIGIDBODY_HEAD ){ |
101 |
> |
if( the_namespc.type != MOLECULE_HEAD ){ |
102 |
|
print_tree_error( the_node, |
103 |
< |
"The atom block is not in a molecule or rigidBody namespace" ); |
103 |
> |
"The atom block is not in a molecule namespace" ); |
104 |
|
} |
105 |
|
else{ |
106 |
|
init_atom( the_node->index ); |
113 |
|
case RIGIDBODY_HEAD: |
114 |
|
if( the_namespc.type != MOLECULE_HEAD ){ |
115 |
|
print_tree_error( the_node, |
116 |
< |
"The rigid body block is not in a molecule namespace" ); |
116 |
> |
"The RigidBody block is not in a Molecule namespace" ); |
117 |
|
} |
118 |
|
else{ |
119 |
|
init_rigidbody( the_node->index ); |
122 |
|
walk_down( the_node->stmt_list, current_namespc ); |
123 |
|
} |
124 |
|
break; |
125 |
+ |
|
126 |
+ |
case CUTOFFGROUP_HEAD: |
127 |
+ |
if( the_namespc.type != CUTOFFGROUP_HEAD ){ |
128 |
+ |
print_tree_error( the_node, |
129 |
+ |
"The CutoffGroup block is not in a Molecule namespace" ); |
130 |
+ |
} |
131 |
+ |
else{ |
132 |
+ |
init_cutoffgroup( the_node->index ); |
133 |
+ |
current_namespc.index = the_node->index; |
134 |
+ |
current_namespc.type = the_node->type; |
135 |
+ |
walk_down( the_node->stmt_list, current_namespc ); |
136 |
+ |
} |
137 |
+ |
break; |
138 |
|
|
139 |
|
case BOND_HEAD: |
140 |
|
if( the_namespc.type != MOLECULE_HEAD ){ |
201 |
|
|
202 |
|
switch( the_node->type ){ |
203 |
|
|
204 |
< |
case MEMBER_STMT: |
204 |
> |
case MEMBERS_STMT: |
205 |
|
switch( the_namespc.type ){ |
206 |
|
case BOND_HEAD: // fall through |
207 |
|
case BEND_HEAD: // fall through |
208 |
< |
case TORSION_HEAD: // same for the first three |
208 |
> |
case TORSION_HEAD: |
209 |
> |
case RIGIDBODY_HEAD: |
210 |
> |
case CUTOFFGROUP_HEAD: // same for the first four |
211 |
|
init_members( the_node, the_namespc ); |
212 |
|
break; |
213 |
|
|
214 |
|
default: |
215 |
|
print_tree_error( the_node, |
216 |
< |
"Member statement not in a bond, bend, " |
217 |
< |
"or torsion" ); |
216 |
> |
"Members statement not in a bond, bend, " |
217 |
> |
"torsion, RigidBody, or CutoffGroup" ); |
218 |
|
break; |
219 |
|
} |
220 |
|
break; |
240 |
|
break; |
241 |
|
|
242 |
|
case POSITION_STMT: |
243 |
< |
if( the_namespc.type != ATOM_HEAD && the_namespc.type != RIGIDBODY_HEAD){ |
243 |
> |
if( the_namespc.type != ATOM_HEAD ){ |
244 |
|
print_tree_error( the_node, |
245 |
|
"position statement is not located in an " |
246 |
< |
"atom or rigidBody block" ); |
246 |
> |
"atom block" ); |
247 |
|
} |
248 |
|
|
249 |
|
init_position( the_node, the_namespc ); |
250 |
|
break; |
251 |
|
|
252 |
|
case ORIENTATION_STMT: |
253 |
< |
if( the_namespc.type != ATOM_HEAD && the_namespc.type != RIGIDBODY_HEAD){ |
253 |
> |
if( the_namespc.type != ATOM_HEAD ){ |
254 |
|
print_tree_error( the_node, |
255 |
|
"orientation statement is not located in an " |
256 |
< |
"atom or rigidBody block" ); |
256 |
> |
"atom block" ); |
257 |
|
} |
258 |
|
|
259 |
|
init_orientation( the_node, the_namespc ); |
310 |
|
"Parse tree error: rigidBody head node error -> %s\n", |
311 |
|
err_msg ); |
312 |
|
break; |
313 |
+ |
|
314 |
+ |
case CUTOFFGROUP_HEAD: |
315 |
+ |
sprintf( painCave.errMsg, |
316 |
+ |
"Parse tree error: CutoffGroup head node error -> %s\n", |
317 |
+ |
err_msg ); |
318 |
+ |
break; |
319 |
|
|
320 |
|
case ATOM_HEAD: |
321 |
|
sprintf( painCave.errMsg, |
337 |
|
err_node->index, |
338 |
|
err_msg ); |
339 |
|
break; |
340 |
< |
|
320 |
< |
case TORSION_HEAD: |
321 |
< |
sprintf( painCave.errMsg, |
322 |
< |
"Parse tree error: torsion head node error [%d] -> %s\n", |
323 |
< |
err_node->index, |
324 |
< |
err_msg ); |
325 |
< |
break; |
326 |
< |
|
340 |
> |
|
341 |
|
case ZCONSTRAINT_HEAD: |
342 |
|
sprintf( painCave.errMsg, |
343 |
|
"Parse tree error: Zconstraint head node error [%d] -> %s\n", |
345 |
|
err_msg ); |
346 |
|
break; |
347 |
|
|
348 |
< |
case MEMBER_STMT: |
348 |
> |
case MEMBERS_STMT: |
349 |
|
sprintf( painCave.errMsg, |
350 |
< |
"Parse tree error: member node error => ( %d, %d, %d, %d )\n" |
350 |
> |
"Parse tree error: members node error (nMembers = %d)\n" |
351 |
|
" -> %s\n", |
352 |
< |
err_node->the_data.mbr.a, |
339 |
< |
err_node->the_data.mbr.b, |
340 |
< |
err_node->the_data.mbr.c, |
341 |
< |
err_node->the_data.mbr.d, |
352 |
> |
err_node->the_data.mbrs.nMembers, |
353 |
|
err_msg ); |
354 |
|
break; |
355 |
|
|
408 |
|
sprintf( painCave.errMsg, |
409 |
|
"Parse tree error: orientation node error => ( %lf, %lf, %lf )\n" |
410 |
|
" -> %s\n", |
411 |
< |
err_node->the_data.ort.x, |
412 |
< |
err_node->the_data.ort.y, |
413 |
< |
err_node->the_data.ort.z, |
411 |
> |
err_node->the_data.ort.phi, |
412 |
> |
err_node->the_data.ort.theta, |
413 |
> |
err_node->the_data.ort.psi, |
414 |
|
err_msg ); |
415 |
|
break; |
416 |
|
|