1 |
#include <stdlib.h> |
2 |
#include <stdio.h> |
3 |
#include <string.h> |
4 |
|
5 |
#include "MakeStamps.hpp" |
6 |
#include "MoleculeStamp.hpp" |
7 |
#include "RigidBodyStamp.hpp" |
8 |
#include "simError.h" |
9 |
#ifdef IS_MPI |
10 |
#include "mpiBASS.h" |
11 |
#endif // is_mpi |
12 |
|
13 |
LinkedMolStamp::~LinkedMolStamp(){ |
14 |
if( mol_stamp != NULL ) delete mol_stamp; |
15 |
if( next != NULL ) delete next; |
16 |
} |
17 |
|
18 |
void LinkedMolStamp::add( LinkedMolStamp* newbie ){ |
19 |
|
20 |
if( next != NULL ) next->add( newbie ); |
21 |
else{ |
22 |
next = newbie; |
23 |
next->setPrev( this ); |
24 |
} |
25 |
} |
26 |
|
27 |
MoleculeStamp* LinkedMolStamp::match( char* id ){ |
28 |
|
29 |
if( mol_stamp != NULL ){ |
30 |
if(!strcmp( mol_stamp->getID(), id )){ |
31 |
|
32 |
// make sure we aren't hiding somebody else with the same name |
33 |
if(next != NULL ){ |
34 |
if( next->match( id ) != NULL){ |
35 |
sprintf( painCave.errMsg, |
36 |
"Molecule Stamp Error. Two separate of declarations of " |
37 |
"%s present.\n", |
38 |
id ); |
39 |
painCave.isFatal = 1; |
40 |
simError(); |
41 |
#ifdef IS_MPI |
42 |
if( painCave.isEventLoop ){ |
43 |
if( worldRank == 0 ) mpiInterfaceExit(); |
44 |
} |
45 |
#endif //is_mpi |
46 |
} |
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else return mol_stamp; |
48 |
} |
49 |
else return mol_stamp; |
50 |
} |
51 |
} |
52 |
|
53 |
if( next != NULL ) return next->match( id ); |
54 |
|
55 |
return NULL; |
56 |
} |
57 |
|
58 |
LinkedMolStamp* LinkedMolStamp::extract( char* id ){ |
59 |
|
60 |
if( mol_stamp != NULL ){ |
61 |
if(!strcmp( mol_stamp->getID(), id )){ |
62 |
|
63 |
// make sure we aren't hiding somebody else with the same name |
64 |
if(next != NULL ){ |
65 |
if( next->match( id ) != NULL){ |
66 |
sprintf( painCave.errMsg, |
67 |
"Molecule Stamp Error. Two separate of declarations of " |
68 |
"%s present.\n", |
69 |
id ); |
70 |
painCave.isFatal = 1; |
71 |
simError(); |
72 |
#ifdef IS_MPI |
73 |
if( painCave.isEventLoop ){ |
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if( worldRank == 0 ) mpiInterfaceExit(); |
75 |
} |
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#endif //is_mpi |
77 |
} |
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} |
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|
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prev->setNext( next ); |
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if( next != NULL ) next->setPrev( prev ); |
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return this; |
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} |
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} |
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|
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if( next != NULL ) return next->extract( id ); |
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|
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return NULL; |
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} |
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|
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MakeStamps::MakeStamps(){ |
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|
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int i; |
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|
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hash_size = 47; |
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hash_shift = 4; |
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|
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my_mols = new LinkedMolStamp*[hash_size]; |
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for( i=0; i<hash_size; i++ ){ |
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my_mols[i] = new LinkedMolStamp(); |
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} |
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|
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} |
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|
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MakeStamps::~MakeStamps(){ |
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|
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int i; |
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|
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for( i=0; i<hash_size; i++ ){ |
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if( my_mols[i] != NULL ) delete my_mols[i]; |
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} |
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delete[] my_mols; |
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} |
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|
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int MakeStamps::hash( char* text ){ |
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|
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register unsigned short int i = 0; // loop counter |
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int key = 0; // the hash key |
119 |
|
120 |
while( text[i] != '\0' ){ |
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|
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key = ( ( key << hash_shift ) + text[i] ) % hash_size; |
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|
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i++; |
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} |
126 |
|
127 |
if( key < 0 ){ |
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|
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// if the key is less than zero, we've had an overflow error |
130 |
|
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sprintf( painCave.errMsg, |
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"There has been an overflow error in the MakeStamps hash key."); |
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painCave.isFatal = 1; |
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simError(); |
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#ifdef IS_MPI |
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if( painCave.isEventLoop ){ |
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if( worldRank == 0 ) mpiInterfaceExit(); |
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} |
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#endif //is_mpi |
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} |
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|
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return key; |
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} |
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|
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LinkedMolStamp* MakeStamps::extractMolStamp( char* the_id ){ |
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int key; |
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|
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key = hash( the_id ); |
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if( my_mols[key] != NULL ){ |
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return my_mols[key]->extract( the_id ); |
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} |
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|
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return NULL; |
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} |
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|
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void MakeStamps::addMolStamp( MoleculeStamp* the_stamp ){ |
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|
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int key; |
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LinkedMolStamp* linked_mol; |
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|
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key = hash( the_stamp->getID() ); |
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|
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linked_mol = new LinkedMolStamp; |
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linked_mol->setStamp( the_stamp ); |
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|
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my_mols[key]->add( linked_mol ); |
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|
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} |
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|
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|
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int MakeStamps::newMolecule( event* the_event ){ |
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|
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current_mol = new MoleculeStamp; |
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return 1; |
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} |
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|
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int MakeStamps::moleculeAssign( event* the_event ){ |
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|
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switch( the_event->evt.asmt.asmt_type ){ |
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|
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case STRING: |
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the_event->err_msg = current_mol->assignString( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.sval ); |
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break; |
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|
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case DOUBLE: |
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the_event->err_msg = current_mol->assignDouble( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.dval ); |
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break; |
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|
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case INT: |
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the_event->err_msg = current_mol->assignInt( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.ival ); |
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break; |
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|
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default: |
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the_event->err_msg = strdup( "MakeStamp error. Invalid molecule" |
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" assignment type" ); |
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return 0; |
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break; |
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} |
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if( the_event->err_msg != NULL ) return 0; |
203 |
return 1; |
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} |
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|
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int MakeStamps::moleculeEnd( event* the_event ){ |
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|
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the_event->err_msg = current_mol->checkMe(); |
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// if err_msg is set, then something is wrong |
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if( the_event->err_msg != NULL ) return 0; |
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|
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addMolStamp( current_mol ); |
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return 1; |
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} |
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|
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int MakeStamps::newRigidBody( event* the_event ){ |
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|
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current_rigidbody = new RigidBodyStamp; |
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|
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the_event->err_msg = current_mol->addRigidBody( current_rigidbody, |
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the_event->evt.blk_index ); |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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} |
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|
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int MakeStamps::rigidBodyPosition( event* the_event ){ |
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|
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current_rigidbody->setPosition( the_event->evt.pos.x, |
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the_event->evt.pos.y, |
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the_event->evt.pos.z ); |
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return 1; |
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} |
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|
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|
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int MakeStamps::rigidBodyOrientation( event* the_event ){ |
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|
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current_rigidbody->setOrientation( the_event->evt.ornt.x, |
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the_event->evt.ornt.y, |
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the_event->evt.ornt.z ); |
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return 1; |
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} |
242 |
|
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int MakeStamps::rigidBodyAssign( event* the_event ){ |
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|
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switch( the_event->evt.asmt.asmt_type ){ |
246 |
|
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case STRING: |
248 |
the_event->err_msg = |
249 |
current_rigidbody->assignString( the_event->evt.asmt.lhs, |
250 |
the_event->evt.asmt.rhs.sval ); |
251 |
if( the_event->err_msg != NULL ) return 0; |
252 |
return 1; |
253 |
break; |
254 |
|
255 |
case DOUBLE: |
256 |
the_event->err_msg = |
257 |
current_rigidbody->assignDouble( the_event->evt.asmt.lhs, |
258 |
the_event->evt.asmt.rhs.dval ); |
259 |
if( the_event->err_msg != NULL ) return 0; |
260 |
return 1; |
261 |
break; |
262 |
|
263 |
case INT: |
264 |
the_event->err_msg = |
265 |
current_rigidbody->assignInt( the_event->evt.asmt.lhs, |
266 |
the_event->evt.asmt.rhs.ival ); |
267 |
if( the_event->err_msg != NULL ) return 0; |
268 |
return 1; |
269 |
break; |
270 |
|
271 |
default: |
272 |
the_event->err_msg = strdup( "MakeStamp error. Invalid rigidBody" |
273 |
" assignment type" ); |
274 |
return 0; |
275 |
break; |
276 |
} |
277 |
return 0; |
278 |
} |
279 |
|
280 |
int MakeStamps::rigidBodyEnd( event* the_event ){ |
281 |
|
282 |
the_event->err_msg = current_rigidbody->checkMe(); |
283 |
if( the_event->err_msg != NULL ) return 0; |
284 |
|
285 |
return 1; |
286 |
} |
287 |
|
288 |
int MakeStamps::newAtomInMolecule( event* the_event ){ |
289 |
|
290 |
current_atom = new AtomStamp; |
291 |
|
292 |
the_event->err_msg = current_mol->addAtom( current_atom, |
293 |
the_event->evt.blk_index ); |
294 |
|
295 |
if( the_event->err_msg != NULL ) return 0; |
296 |
return 1; |
297 |
} |
298 |
|
299 |
int MakeStamps::newAtomInRigidBody( event* the_event ){ |
300 |
|
301 |
current_atom = new AtomStamp; |
302 |
|
303 |
the_event->err_msg = current_rigidbody->addAtom( current_atom, |
304 |
the_event->evt.blk_index ); |
305 |
|
306 |
if( the_event->err_msg != NULL ) return 0; |
307 |
return 1; |
308 |
} |
309 |
|
310 |
int MakeStamps::atomPosition( event* the_event ){ |
311 |
|
312 |
current_atom->setPosition( the_event->evt.pos.x, |
313 |
the_event->evt.pos.y, |
314 |
the_event->evt.pos.z ); |
315 |
return 1; |
316 |
} |
317 |
|
318 |
|
319 |
int MakeStamps::atomOrientation( event* the_event ){ |
320 |
|
321 |
current_atom->setOrientation( the_event->evt.ornt.x, |
322 |
the_event->evt.ornt.y, |
323 |
the_event->evt.ornt.z ); |
324 |
return 1; |
325 |
} |
326 |
|
327 |
int MakeStamps::atomAssign( event* the_event ){ |
328 |
|
329 |
switch( the_event->evt.asmt.asmt_type ){ |
330 |
|
331 |
case STRING: |
332 |
the_event->err_msg = |
333 |
current_atom->assignString( the_event->evt.asmt.lhs, |
334 |
the_event->evt.asmt.rhs.sval ); |
335 |
if( the_event->err_msg != NULL ) return 0; |
336 |
return 1; |
337 |
break; |
338 |
|
339 |
case DOUBLE: |
340 |
the_event->err_msg = |
341 |
current_atom->assignDouble( the_event->evt.asmt.lhs, |
342 |
the_event->evt.asmt.rhs.dval ); |
343 |
if( the_event->err_msg != NULL ) return 0; |
344 |
return 1; |
345 |
break; |
346 |
|
347 |
case INT: |
348 |
the_event->err_msg = |
349 |
current_atom->assignInt( the_event->evt.asmt.lhs, |
350 |
the_event->evt.asmt.rhs.ival ); |
351 |
if( the_event->err_msg != NULL ) return 0; |
352 |
return 1; |
353 |
break; |
354 |
|
355 |
default: |
356 |
the_event->err_msg = strdup( "MakeStamp error. Invalid atom" |
357 |
" assignment type" ); |
358 |
return 0; |
359 |
break; |
360 |
} |
361 |
return 0; |
362 |
} |
363 |
|
364 |
int MakeStamps::atomEnd( event* the_event ){ |
365 |
|
366 |
the_event->err_msg = current_atom->checkMe(); |
367 |
if( the_event->err_msg != NULL ) return 0; |
368 |
|
369 |
return 1; |
370 |
} |
371 |
|
372 |
int MakeStamps::newBond( event* the_event ){ |
373 |
|
374 |
current_bond = new BondStamp; |
375 |
|
376 |
the_event->err_msg = current_mol->addBond( current_bond, |
377 |
the_event->evt.blk_index ); |
378 |
if( the_event->err_msg != NULL ) return 0; |
379 |
|
380 |
return 1; |
381 |
} |
382 |
|
383 |
int MakeStamps::bondAssign( event* the_event ){ |
384 |
|
385 |
switch( the_event->evt.asmt.asmt_type ){ |
386 |
|
387 |
case STRING: |
388 |
current_bond->assignString( the_event->evt.asmt.lhs, |
389 |
the_event->evt.asmt.rhs.sval ); |
390 |
return 1; |
391 |
break; |
392 |
|
393 |
case DOUBLE: |
394 |
current_bond->assignDouble( the_event->evt.asmt.lhs, |
395 |
the_event->evt.asmt.rhs.dval ); |
396 |
return 1; |
397 |
break; |
398 |
|
399 |
case INT: |
400 |
current_bond->assignInt( the_event->evt.asmt.lhs, |
401 |
the_event->evt.asmt.rhs.ival ); |
402 |
return 1; |
403 |
break; |
404 |
|
405 |
default: |
406 |
the_event->err_msg = strdup( "MakeStamp error. Invalid bond" |
407 |
" assignment type" ); |
408 |
return 0; |
409 |
break; |
410 |
} |
411 |
return 0; |
412 |
} |
413 |
|
414 |
int MakeStamps::bondMember( event* the_event ){ |
415 |
|
416 |
current_bond->members( the_event->evt.mbr.a, |
417 |
the_event->evt.mbr.b ); |
418 |
return 1; |
419 |
} |
420 |
|
421 |
int MakeStamps::bondConstraint( event* the_event ){ |
422 |
|
423 |
current_bond->constrain( the_event->evt.cnstr ); |
424 |
return 1; |
425 |
} |
426 |
|
427 |
int MakeStamps::bondEnd( event* the_event ){ |
428 |
|
429 |
the_event->err_msg = current_bond->checkMe(); |
430 |
if( the_event->err_msg != NULL ) return 0; |
431 |
|
432 |
return 1; |
433 |
} |
434 |
|
435 |
int MakeStamps::newBend( event* the_event ){ |
436 |
|
437 |
current_bend = new BendStamp; |
438 |
|
439 |
the_event->err_msg = current_mol->addBend( current_bend, |
440 |
the_event->evt.blk_index ); |
441 |
if( the_event->err_msg != NULL ) return 0; |
442 |
|
443 |
return 1; |
444 |
} |
445 |
|
446 |
int MakeStamps::bendAssign( event* the_event ){ |
447 |
|
448 |
switch( the_event->evt.asmt.asmt_type ){ |
449 |
|
450 |
case STRING: |
451 |
current_bend->assignString( the_event->evt.asmt.lhs, |
452 |
the_event->evt.asmt.rhs.sval ); |
453 |
return 1; |
454 |
break; |
455 |
|
456 |
case DOUBLE: |
457 |
current_bend->assignDouble( the_event->evt.asmt.lhs, |
458 |
the_event->evt.asmt.rhs.dval ); |
459 |
return 1; |
460 |
break; |
461 |
|
462 |
case INT: |
463 |
current_bend->assignInt( the_event->evt.asmt.lhs, |
464 |
the_event->evt.asmt.rhs.ival ); |
465 |
return 1; |
466 |
break; |
467 |
|
468 |
default: |
469 |
the_event->err_msg = strdup( "MakeStamp error. Invalid bend" |
470 |
" assignment type" ); |
471 |
return 0; |
472 |
break; |
473 |
} |
474 |
return 0; |
475 |
} |
476 |
|
477 |
int MakeStamps::bendMember( event* the_event ){ |
478 |
|
479 |
current_bend->members( the_event->evt.mbr.a, |
480 |
the_event->evt.mbr.b, |
481 |
the_event->evt.mbr.c ); |
482 |
return 1; |
483 |
} |
484 |
|
485 |
int MakeStamps::bendConstraint( event* the_event ){ |
486 |
|
487 |
current_bend->constrain( the_event->evt.cnstr ); |
488 |
return 1; |
489 |
} |
490 |
|
491 |
int MakeStamps::bendEnd( event* the_event ){ |
492 |
|
493 |
the_event->err_msg = current_bend->checkMe(); |
494 |
if( the_event->err_msg != NULL ) return 0; |
495 |
|
496 |
return 1; |
497 |
} |
498 |
|
499 |
int MakeStamps::newTorsion( event* the_event ){ |
500 |
|
501 |
current_torsion = new TorsionStamp; |
502 |
|
503 |
the_event->err_msg = current_mol->addTorsion( current_torsion, |
504 |
the_event->evt.blk_index ); |
505 |
if( the_event->err_msg != NULL ) return 0; |
506 |
|
507 |
return 1; |
508 |
} |
509 |
|
510 |
int MakeStamps::torsionAssign( event* the_event ){ |
511 |
|
512 |
switch( the_event->evt.asmt.asmt_type ){ |
513 |
|
514 |
case STRING: |
515 |
current_torsion->assignString( the_event->evt.asmt.lhs, |
516 |
the_event->evt.asmt.rhs.sval ); |
517 |
return 1; |
518 |
break; |
519 |
|
520 |
case DOUBLE: |
521 |
current_torsion->assignDouble( the_event->evt.asmt.lhs, |
522 |
the_event->evt.asmt.rhs.dval ); |
523 |
return 1; |
524 |
break; |
525 |
|
526 |
case INT: |
527 |
current_torsion->assignInt( the_event->evt.asmt.lhs, |
528 |
the_event->evt.asmt.rhs.ival ); |
529 |
return 1; |
530 |
break; |
531 |
|
532 |
default: |
533 |
the_event->err_msg = strdup( "MakeStamp error. Invalid torsion" |
534 |
" assignment type" ); |
535 |
return 0; |
536 |
break; |
537 |
} |
538 |
return 0; |
539 |
} |
540 |
|
541 |
int MakeStamps::torsionMember( event* the_event ){ |
542 |
|
543 |
current_torsion->members( the_event->evt.mbr.a, |
544 |
the_event->evt.mbr.b, |
545 |
the_event->evt.mbr.c, |
546 |
the_event->evt.mbr.d ); |
547 |
return 1; |
548 |
} |
549 |
|
550 |
int MakeStamps::torsionConstraint( event* the_event ){ |
551 |
|
552 |
current_torsion->constrain( the_event->evt.cnstr ); |
553 |
return 1; |
554 |
} |
555 |
|
556 |
int MakeStamps::torsionEnd( event* the_event ){ |
557 |
|
558 |
the_event->err_msg = current_torsion->checkMe(); |
559 |
if( the_event->err_msg != NULL ) return 0; |
560 |
|
561 |
return 1; |
562 |
} |