| 4 |
|
|
| 5 |
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#include "MakeStamps.hpp" |
| 6 |
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#include "MoleculeStamp.hpp" |
| 7 |
+ |
#include "RigidBodyStamp.hpp" |
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+ |
#include "CutoffGroupStamp.hpp" |
| 9 |
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#include "simError.h" |
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#ifdef IS_MPI |
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#include "mpiBASS.h" |
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int MakeStamps::newRigidBody( event* the_event ){ |
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|
| 219 |
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current_rigidbody = new RigidBodyStamp; |
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|
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printf("makeStamps rb index = %d\n", the_event->evt.blk_index); |
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|
|
| 223 |
|
the_event->err_msg = current_mol->addRigidBody( current_rigidbody, |
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the_event->evt.blk_index ); |
| 225 |
|
if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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} |
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|
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int MakeStamps::rigidBodyPosition( event* the_event ){ |
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|
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current_rigidbody->setPosition( the_event->evt.pos.x, |
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the_event->evt.pos.y, |
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the_event->evt.pos.z ); |
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return 1; |
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– |
} |
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|
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|
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int MakeStamps::rigidBodyOrientation( event* the_event ){ |
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|
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current_rigidbody->setOrientation( the_event->evt.ornt.x, |
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the_event->evt.ornt.y, |
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the_event->evt.ornt.z ); |
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return 1; |
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|
} |
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|
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|
break; |
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} |
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|
return 0; |
| 264 |
+ |
} |
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|
| 266 |
+ |
int MakeStamps::rigidBodyMembers( event* the_event ){ |
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|
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int i; |
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|
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+ |
if( the_event->evt.mbrs.nMembers > 0 ){ |
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|
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for (i = 0; i < the_event->evt.mbrs.nMembers; i++) { |
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current_rigidbody->addMember(the_event->evt.mbrs.memberList[i]); |
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} |
| 275 |
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|
| 276 |
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return 1; |
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|
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} else { |
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the_event->err_msg = strdup( "MakeStamp error. No members in memberList " |
| 280 |
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" for this rigidBody."); |
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return 0; |
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|
| 283 |
+ |
} |
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|
} |
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|
| 286 |
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int MakeStamps::rigidBodyEnd( event* the_event ){ |
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|
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the_event->err_msg = current_rigidbody->checkMe(); |
| 289 |
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if( the_event->err_msg != NULL ) return 0; |
| 290 |
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|
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return 1; |
| 292 |
+ |
} |
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|
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+ |
int MakeStamps::newCutoffGroup( event* the_event ){ |
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|
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current_cutoffgroup = new CutoffGroupStamp; |
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|
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the_event->err_msg = current_mol->addCutoffGroup( current_cutoffgroup, |
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the_event->evt.blk_index ); |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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|
} |
| 303 |
|
|
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+ |
int MakeStamps::cutoffGroupAssign( event* the_event ){ |
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|
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switch( the_event->evt.asmt.asmt_type ){ |
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|
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case STRING: |
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the_event->err_msg = |
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current_cutoffgroup->assignString( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.sval ); |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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break; |
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|
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case DOUBLE: |
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the_event->err_msg = |
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current_cutoffgroup->assignDouble( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.dval ); |
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if( the_event->err_msg != NULL ) return 0; |
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return 1; |
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break; |
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+ |
|
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case INT: |
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the_event->err_msg = |
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current_cutoffgroup->assignInt( the_event->evt.asmt.lhs, |
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the_event->evt.asmt.rhs.ival ); |
| 328 |
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if( the_event->err_msg != NULL ) return 0; |
| 329 |
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return 1; |
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break; |
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+ |
|
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default: |
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the_event->err_msg = strdup( "MakeStamp error. Invalid CutoffGroup" |
| 334 |
+ |
" assignment type" ); |
| 335 |
+ |
return 0; |
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+ |
break; |
| 337 |
+ |
} |
| 338 |
+ |
return 0; |
| 339 |
+ |
} |
| 340 |
+ |
|
| 341 |
+ |
int MakeStamps::cutoffGroupMembers( event* the_event ){ |
| 342 |
+ |
|
| 343 |
+ |
int i; |
| 344 |
+ |
|
| 345 |
+ |
if( the_event->evt.mbrs.nMembers > 0 ){ |
| 346 |
+ |
|
| 347 |
+ |
for (i = 0; i < the_event->evt.mbrs.nMembers; i++) { |
| 348 |
+ |
current_cutoffgroup->addMember(the_event->evt.mbrs.memberList[i]); |
| 349 |
+ |
} |
| 350 |
+ |
|
| 351 |
+ |
return 1; |
| 352 |
+ |
|
| 353 |
+ |
} else { |
| 354 |
+ |
the_event->err_msg = strdup( "MakeStamp error. No members in memberList " |
| 355 |
+ |
" for this CutoffGroup."); |
| 356 |
+ |
return 0; |
| 357 |
+ |
|
| 358 |
+ |
} |
| 359 |
+ |
} |
| 360 |
+ |
|
| 361 |
+ |
int MakeStamps::cutoffGroupEnd( event* the_event ){ |
| 362 |
+ |
|
| 363 |
+ |
the_event->err_msg = current_cutoffgroup->checkMe(); |
| 364 |
+ |
if( the_event->err_msg != NULL ) return 0; |
| 365 |
+ |
|
| 366 |
+ |
return 1; |
| 367 |
+ |
} |
| 368 |
+ |
|
| 369 |
|
int MakeStamps::newAtom( event* the_event ){ |
| 370 |
|
|
| 371 |
|
current_atom = new AtomStamp; |
| 372 |
|
|
| 373 |
|
the_event->err_msg = current_mol->addAtom( current_atom, |
| 374 |
|
the_event->evt.blk_index ); |
| 375 |
+ |
|
| 376 |
|
if( the_event->err_msg != NULL ) return 0; |
| 377 |
|
return 1; |
| 378 |
|
} |
| 388 |
|
|
| 389 |
|
int MakeStamps::atomOrientation( event* the_event ){ |
| 390 |
|
|
| 391 |
< |
current_atom->setOrientation( the_event->evt.ornt.x, |
| 392 |
< |
the_event->evt.ornt.y, |
| 393 |
< |
the_event->evt.ornt.z ); |
| 391 |
> |
current_atom->setOrientation( the_event->evt.ornt.phi, |
| 392 |
> |
the_event->evt.ornt.theta, |
| 393 |
> |
the_event->evt.ornt.psi ); |
| 394 |
|
return 1; |
| 395 |
|
} |
| 396 |
|
|
| 481 |
|
return 0; |
| 482 |
|
} |
| 483 |
|
|
| 484 |
< |
int MakeStamps::bondMember( event* the_event ){ |
| 484 |
> |
int MakeStamps::bondMembers( event* the_event ){ |
| 485 |
> |
|
| 486 |
> |
if( the_event->evt.mbrs.nMembers == 2 ){ |
| 487 |
> |
|
| 488 |
> |
current_bond->members( the_event->evt.mbrs.memberList[0], |
| 489 |
> |
the_event->evt.mbrs.memberList[1] ); |
| 490 |
> |
return 1; |
| 491 |
|
|
| 492 |
< |
current_bond->members( the_event->evt.mbr.a, |
| 493 |
< |
the_event->evt.mbr.b ); |
| 494 |
< |
return 1; |
| 492 |
> |
} else { |
| 493 |
> |
the_event->err_msg = strdup( "MakeStamp error. Wrong number of members " |
| 494 |
> |
" in bond"); |
| 495 |
> |
return 0; |
| 496 |
> |
|
| 497 |
> |
} |
| 498 |
> |
|
| 499 |
|
} |
| 500 |
|
|
| 501 |
|
int MakeStamps::bondConstraint( event* the_event ){ |
| 554 |
|
return 0; |
| 555 |
|
} |
| 556 |
|
|
| 557 |
< |
int MakeStamps::bendMember( event* the_event ){ |
| 557 |
> |
int MakeStamps::bendMembers( event* the_event ){ |
| 558 |
|
|
| 559 |
< |
current_bend->members( the_event->evt.mbr.a, |
| 560 |
< |
the_event->evt.mbr.b, |
| 561 |
< |
the_event->evt.mbr.c ); |
| 562 |
< |
return 1; |
| 559 |
> |
|
| 560 |
> |
switch( the_event->evt.mbrs.nMembers ) { |
| 561 |
> |
case 3: |
| 562 |
> |
current_bend->members( the_event->evt.mbrs.memberList[0], |
| 563 |
> |
the_event->evt.mbrs.memberList[1], |
| 564 |
> |
the_event->evt.mbrs.memberList[2]); |
| 565 |
> |
return 1; |
| 566 |
> |
break; |
| 567 |
> |
case 2: |
| 568 |
> |
current_bend->members( the_event->evt.mbrs.memberList[0], |
| 569 |
> |
the_event->evt.mbrs.memberList[1], |
| 570 |
> |
0 ); |
| 571 |
> |
return 1; |
| 572 |
> |
break; |
| 573 |
> |
default: |
| 574 |
> |
the_event->err_msg = strdup( "MakeStamp error. Wrong number of members " |
| 575 |
> |
"in bend."); |
| 576 |
> |
return 0; |
| 577 |
> |
break; |
| 578 |
> |
} |
| 579 |
> |
return 0; |
| 580 |
|
} |
| 581 |
|
|
| 582 |
|
int MakeStamps::bendConstraint( event* the_event ){ |
| 635 |
|
return 0; |
| 636 |
|
} |
| 637 |
|
|
| 638 |
< |
int MakeStamps::torsionMember( event* the_event ){ |
| 638 |
> |
int MakeStamps::torsionMembers( event* the_event ){ |
| 639 |
|
|
| 640 |
< |
current_torsion->members( the_event->evt.mbr.a, |
| 641 |
< |
the_event->evt.mbr.b, |
| 642 |
< |
the_event->evt.mbr.c, |
| 643 |
< |
the_event->evt.mbr.d ); |
| 644 |
< |
return 1; |
| 640 |
> |
if( the_event->evt.mbrs.nMembers == 4 ){ |
| 641 |
> |
|
| 642 |
> |
current_torsion->members( the_event->evt.mbrs.memberList[0], |
| 643 |
> |
the_event->evt.mbrs.memberList[1], |
| 644 |
> |
the_event->evt.mbrs.memberList[2], |
| 645 |
> |
the_event->evt.mbrs.memberList[3]); |
| 646 |
> |
return 1; |
| 647 |
> |
|
| 648 |
> |
} else { |
| 649 |
> |
the_event->err_msg = strdup( "MakeStamp error. Wrong number of members " |
| 650 |
> |
" in torsion"); |
| 651 |
> |
return 0; |
| 652 |
> |
|
| 653 |
> |
} |
| 654 |
|
} |
| 655 |
|
|
| 656 |
|
int MakeStamps::torsionConstraint( event* the_event ){ |