| 1 | mmeineke | 790 | #include <stdlib.h> | 
| 2 |  |  | #include <stdio.h> | 
| 3 |  |  | #include <string.h> | 
| 4 | mmeineke | 377 |  | 
| 5 |  |  | #include "MakeStamps.hpp" | 
| 6 |  |  | #include "MoleculeStamp.hpp" | 
| 7 | gezelter | 981 | #include "RigidBodyStamp.hpp" | 
| 8 | gezelter | 1153 | #include "CutoffGroupStamp.hpp" | 
| 9 | mmeineke | 377 | #include "simError.h" | 
| 10 |  |  | #ifdef IS_MPI | 
| 11 |  |  | #include "mpiBASS.h" | 
| 12 |  |  | #endif // is_mpi | 
| 13 |  |  |  | 
| 14 |  |  | LinkedMolStamp::~LinkedMolStamp(){ | 
| 15 |  |  | if( mol_stamp != NULL ) delete mol_stamp; | 
| 16 |  |  | if( next != NULL ) delete next; | 
| 17 |  |  | } | 
| 18 |  |  |  | 
| 19 |  |  | void LinkedMolStamp::add( LinkedMolStamp* newbie ){ | 
| 20 |  |  |  | 
| 21 |  |  | if( next != NULL ) next->add( newbie ); | 
| 22 |  |  | else{ | 
| 23 |  |  | next = newbie; | 
| 24 |  |  | next->setPrev( this ); | 
| 25 |  |  | } | 
| 26 |  |  | } | 
| 27 |  |  |  | 
| 28 |  |  | MoleculeStamp* LinkedMolStamp::match( char* id ){ | 
| 29 |  |  |  | 
| 30 |  |  | if( mol_stamp != NULL ){ | 
| 31 |  |  | if(!strcmp( mol_stamp->getID(), id )){ | 
| 32 |  |  |  | 
| 33 |  |  | // make sure we aren't hiding somebody else with the same name | 
| 34 |  |  | if(next != NULL ){ | 
| 35 |  |  | if( next->match( id ) != NULL){ | 
| 36 |  |  | sprintf( painCave.errMsg, | 
| 37 |  |  | "Molecule Stamp Error. Two separate of declarations of " | 
| 38 |  |  | "%s present.\n", | 
| 39 |  |  | id ); | 
| 40 |  |  | painCave.isFatal = 1; | 
| 41 |  |  | simError(); | 
| 42 |  |  | #ifdef IS_MPI | 
| 43 |  |  | if( painCave.isEventLoop ){ | 
| 44 |  |  | if( worldRank == 0 ) mpiInterfaceExit(); | 
| 45 |  |  | } | 
| 46 |  |  | #endif //is_mpi | 
| 47 |  |  | } | 
| 48 |  |  | else return mol_stamp; | 
| 49 |  |  | } | 
| 50 |  |  | else  return mol_stamp; | 
| 51 |  |  | } | 
| 52 |  |  | } | 
| 53 |  |  |  | 
| 54 |  |  | if( next != NULL ) return next->match( id ); | 
| 55 |  |  |  | 
| 56 |  |  | return NULL; | 
| 57 |  |  | } | 
| 58 |  |  |  | 
| 59 |  |  | LinkedMolStamp* LinkedMolStamp::extract( char* id ){ | 
| 60 |  |  |  | 
| 61 |  |  | if( mol_stamp != NULL ){ | 
| 62 |  |  | if(!strcmp( mol_stamp->getID(), id )){ | 
| 63 |  |  |  | 
| 64 |  |  | // make sure we aren't hiding somebody else with the same name | 
| 65 |  |  | if(next != NULL ){ | 
| 66 |  |  | if( next->match( id ) != NULL){ | 
| 67 |  |  | sprintf( painCave.errMsg, | 
| 68 |  |  | "Molecule Stamp Error. Two separate of declarations of " | 
| 69 |  |  | "%s present.\n", | 
| 70 |  |  | id ); | 
| 71 |  |  | painCave.isFatal = 1; | 
| 72 |  |  | simError(); | 
| 73 |  |  | #ifdef IS_MPI | 
| 74 |  |  | if( painCave.isEventLoop ){ | 
| 75 |  |  | if( worldRank == 0 ) mpiInterfaceExit(); | 
| 76 |  |  | } | 
| 77 |  |  | #endif //is_mpi | 
| 78 |  |  | } | 
| 79 |  |  | } | 
| 80 |  |  |  | 
| 81 |  |  | prev->setNext( next ); | 
| 82 |  |  | if( next != NULL ) next->setPrev( prev ); | 
| 83 |  |  | return this; | 
| 84 |  |  | } | 
| 85 |  |  | } | 
| 86 |  |  |  | 
| 87 |  |  | if( next != NULL ) return next->extract( id ); | 
| 88 |  |  |  | 
| 89 |  |  | return NULL; | 
| 90 |  |  | } | 
| 91 |  |  |  | 
| 92 |  |  | MakeStamps::MakeStamps(){ | 
| 93 |  |  |  | 
| 94 |  |  | int i; | 
| 95 | gezelter | 747 |  | 
| 96 |  |  | hash_size = 47; | 
| 97 |  |  | hash_shift = 4; | 
| 98 | mmeineke | 377 |  | 
| 99 |  |  | my_mols = new LinkedMolStamp*[hash_size]; | 
| 100 |  |  | for( i=0; i<hash_size; i++ ){ | 
| 101 |  |  | my_mols[i] = new LinkedMolStamp(); | 
| 102 |  |  | } | 
| 103 |  |  |  | 
| 104 |  |  | } | 
| 105 |  |  |  | 
| 106 |  |  | MakeStamps::~MakeStamps(){ | 
| 107 |  |  |  | 
| 108 |  |  | int i; | 
| 109 |  |  |  | 
| 110 |  |  | for( i=0; i<hash_size; i++ ){ | 
| 111 |  |  | if( my_mols[i] != NULL ) delete my_mols[i]; | 
| 112 |  |  | } | 
| 113 |  |  | delete[] my_mols; | 
| 114 |  |  | } | 
| 115 |  |  |  | 
| 116 |  |  | int MakeStamps::hash( char* text ){ | 
| 117 |  |  |  | 
| 118 |  |  | register unsigned short int i = 0; // loop counter | 
| 119 |  |  | int key = 0; // the hash key | 
| 120 |  |  |  | 
| 121 |  |  | while( text[i] != '\0' ){ | 
| 122 |  |  |  | 
| 123 |  |  | key = ( ( key << hash_shift ) + text[i] ) % hash_size; | 
| 124 |  |  |  | 
| 125 |  |  | i++; | 
| 126 |  |  | } | 
| 127 |  |  |  | 
| 128 |  |  | if( key < 0 ){ | 
| 129 |  |  |  | 
| 130 |  |  | // if the key is less than zero, we've had an overflow error | 
| 131 |  |  |  | 
| 132 |  |  | sprintf( painCave.errMsg, | 
| 133 |  |  | "There has been an overflow error in the MakeStamps hash key."); | 
| 134 |  |  | painCave.isFatal = 1; | 
| 135 |  |  | simError(); | 
| 136 |  |  | #ifdef IS_MPI | 
| 137 |  |  | if( painCave.isEventLoop ){ | 
| 138 |  |  | if( worldRank == 0 ) mpiInterfaceExit(); | 
| 139 |  |  | } | 
| 140 |  |  | #endif //is_mpi | 
| 141 |  |  | } | 
| 142 |  |  |  | 
| 143 |  |  | return key; | 
| 144 |  |  | } | 
| 145 |  |  |  | 
| 146 |  |  | LinkedMolStamp* MakeStamps::extractMolStamp( char* the_id ){ | 
| 147 |  |  | int key; | 
| 148 |  |  |  | 
| 149 |  |  | key = hash( the_id ); | 
| 150 |  |  | if( my_mols[key] != NULL ){ | 
| 151 |  |  | return my_mols[key]->extract( the_id ); | 
| 152 |  |  | } | 
| 153 |  |  |  | 
| 154 |  |  | return NULL; | 
| 155 |  |  | } | 
| 156 |  |  |  | 
| 157 |  |  | void MakeStamps::addMolStamp( MoleculeStamp* the_stamp ){ | 
| 158 |  |  |  | 
| 159 |  |  | int key; | 
| 160 |  |  | LinkedMolStamp* linked_mol; | 
| 161 |  |  |  | 
| 162 |  |  | key = hash( the_stamp->getID() ); | 
| 163 |  |  |  | 
| 164 |  |  | linked_mol = new LinkedMolStamp; | 
| 165 |  |  | linked_mol->setStamp( the_stamp ); | 
| 166 |  |  |  | 
| 167 |  |  | my_mols[key]->add( linked_mol ); | 
| 168 |  |  |  | 
| 169 |  |  | } | 
| 170 |  |  |  | 
| 171 |  |  |  | 
| 172 |  |  | int MakeStamps::newMolecule( event* the_event ){ | 
| 173 |  |  |  | 
| 174 |  |  | current_mol = new MoleculeStamp; | 
| 175 |  |  | return 1; | 
| 176 |  |  | } | 
| 177 |  |  |  | 
| 178 |  |  | int MakeStamps::moleculeAssign( event* the_event ){ | 
| 179 |  |  |  | 
| 180 |  |  | switch( the_event->evt.asmt.asmt_type ){ | 
| 181 |  |  |  | 
| 182 |  |  | case STRING: | 
| 183 |  |  | the_event->err_msg = current_mol->assignString( the_event->evt.asmt.lhs, | 
| 184 |  |  | the_event->evt.asmt.rhs.sval ); | 
| 185 |  |  | break; | 
| 186 |  |  |  | 
| 187 |  |  | case DOUBLE: | 
| 188 |  |  | the_event->err_msg = current_mol->assignDouble( the_event->evt.asmt.lhs, | 
| 189 |  |  | the_event->evt.asmt.rhs.dval ); | 
| 190 |  |  | break; | 
| 191 |  |  |  | 
| 192 |  |  | case INT: | 
| 193 |  |  | the_event->err_msg = current_mol->assignInt( the_event->evt.asmt.lhs, | 
| 194 |  |  | the_event->evt.asmt.rhs.ival ); | 
| 195 |  |  | break; | 
| 196 |  |  |  | 
| 197 |  |  | default: | 
| 198 |  |  | the_event->err_msg = strdup( "MakeStamp error. Invalid molecule" | 
| 199 |  |  | " assignment type" ); | 
| 200 |  |  | return 0; | 
| 201 |  |  | break; | 
| 202 |  |  | } | 
| 203 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 204 |  |  | return 1; | 
| 205 |  |  | } | 
| 206 |  |  |  | 
| 207 |  |  | int MakeStamps::moleculeEnd( event* the_event ){ | 
| 208 |  |  |  | 
| 209 |  |  | the_event->err_msg = current_mol->checkMe(); | 
| 210 |  |  | // if err_msg is set, then something is wrong | 
| 211 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 212 |  |  |  | 
| 213 |  |  | addMolStamp( current_mol ); | 
| 214 |  |  | return 1; | 
| 215 |  |  | } | 
| 216 |  |  |  | 
| 217 | gezelter | 957 | int MakeStamps::newRigidBody( event* the_event ){ | 
| 218 |  |  |  | 
| 219 |  |  | current_rigidbody = new RigidBodyStamp; | 
| 220 | gezelter | 1256 |  | 
| 221 | gezelter | 957 | the_event->err_msg = current_mol->addRigidBody( current_rigidbody, | 
| 222 |  |  | the_event->evt.blk_index ); | 
| 223 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 224 |  |  | return 1; | 
| 225 |  |  | } | 
| 226 |  |  |  | 
| 227 |  |  | int MakeStamps::rigidBodyAssign( event* the_event ){ | 
| 228 |  |  |  | 
| 229 |  |  | switch( the_event->evt.asmt.asmt_type ){ | 
| 230 |  |  |  | 
| 231 |  |  | case STRING: | 
| 232 |  |  | the_event->err_msg = | 
| 233 |  |  | current_rigidbody->assignString( the_event->evt.asmt.lhs, | 
| 234 |  |  | the_event->evt.asmt.rhs.sval ); | 
| 235 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 236 |  |  | return 1; | 
| 237 |  |  | break; | 
| 238 |  |  |  | 
| 239 |  |  | case DOUBLE: | 
| 240 |  |  | the_event->err_msg = | 
| 241 |  |  | current_rigidbody->assignDouble( the_event->evt.asmt.lhs, | 
| 242 |  |  | the_event->evt.asmt.rhs.dval ); | 
| 243 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 244 |  |  | return 1; | 
| 245 |  |  | break; | 
| 246 |  |  |  | 
| 247 |  |  | case INT: | 
| 248 |  |  | the_event->err_msg = | 
| 249 |  |  | current_rigidbody->assignInt( the_event->evt.asmt.lhs, | 
| 250 |  |  | the_event->evt.asmt.rhs.ival ); | 
| 251 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 252 |  |  | return 1; | 
| 253 |  |  | break; | 
| 254 |  |  |  | 
| 255 |  |  | default: | 
| 256 |  |  | the_event->err_msg = strdup( "MakeStamp error. Invalid rigidBody" | 
| 257 |  |  | " assignment type" ); | 
| 258 |  |  | return 0; | 
| 259 |  |  | break; | 
| 260 |  |  | } | 
| 261 |  |  | return 0; | 
| 262 |  |  | } | 
| 263 |  |  |  | 
| 264 | gezelter | 998 | int MakeStamps::rigidBodyMembers( event* the_event ){ | 
| 265 |  |  |  | 
| 266 |  |  | int i; | 
| 267 |  |  |  | 
| 268 |  |  | if( the_event->evt.mbrs.nMembers > 0 ){ | 
| 269 |  |  |  | 
| 270 | gezelter | 1099 | for (i = 0; i < the_event->evt.mbrs.nMembers; i++) { | 
| 271 |  |  | current_rigidbody->addMember(the_event->evt.mbrs.memberList[i]); | 
| 272 | gezelter | 998 | } | 
| 273 |  |  |  | 
| 274 |  |  | return 1; | 
| 275 |  |  |  | 
| 276 |  |  | } else { | 
| 277 |  |  | the_event->err_msg = strdup( "MakeStamp error. No members in memberList " | 
| 278 |  |  | " for this rigidBody."); | 
| 279 |  |  | return 0; | 
| 280 |  |  |  | 
| 281 |  |  | } | 
| 282 |  |  | } | 
| 283 |  |  |  | 
| 284 | gezelter | 957 | int MakeStamps::rigidBodyEnd( event* the_event ){ | 
| 285 |  |  |  | 
| 286 |  |  | the_event->err_msg = current_rigidbody->checkMe(); | 
| 287 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 288 |  |  |  | 
| 289 |  |  | return 1; | 
| 290 |  |  | } | 
| 291 |  |  |  | 
| 292 | gezelter | 1153 | int MakeStamps::newCutoffGroup( event* the_event ){ | 
| 293 |  |  |  | 
| 294 |  |  | current_cutoffgroup = new CutoffGroupStamp; | 
| 295 |  |  |  | 
| 296 |  |  | the_event->err_msg = current_mol->addCutoffGroup( current_cutoffgroup, | 
| 297 |  |  | the_event->evt.blk_index ); | 
| 298 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 299 |  |  | return 1; | 
| 300 |  |  | } | 
| 301 |  |  |  | 
| 302 |  |  | int MakeStamps::cutoffGroupAssign( event* the_event ){ | 
| 303 |  |  |  | 
| 304 |  |  | switch( the_event->evt.asmt.asmt_type ){ | 
| 305 |  |  |  | 
| 306 |  |  | case STRING: | 
| 307 |  |  | the_event->err_msg = | 
| 308 |  |  | current_cutoffgroup->assignString( the_event->evt.asmt.lhs, | 
| 309 |  |  | the_event->evt.asmt.rhs.sval ); | 
| 310 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 311 |  |  | return 1; | 
| 312 |  |  | break; | 
| 313 |  |  |  | 
| 314 |  |  | case DOUBLE: | 
| 315 |  |  | the_event->err_msg = | 
| 316 |  |  | current_cutoffgroup->assignDouble( the_event->evt.asmt.lhs, | 
| 317 |  |  | the_event->evt.asmt.rhs.dval ); | 
| 318 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 319 |  |  | return 1; | 
| 320 |  |  | break; | 
| 321 |  |  |  | 
| 322 |  |  | case INT: | 
| 323 |  |  | the_event->err_msg = | 
| 324 |  |  | current_cutoffgroup->assignInt( the_event->evt.asmt.lhs, | 
| 325 |  |  | the_event->evt.asmt.rhs.ival ); | 
| 326 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 327 |  |  | return 1; | 
| 328 |  |  | break; | 
| 329 |  |  |  | 
| 330 |  |  | default: | 
| 331 |  |  | the_event->err_msg = strdup( "MakeStamp error. Invalid CutoffGroup" | 
| 332 |  |  | " assignment type" ); | 
| 333 |  |  | return 0; | 
| 334 |  |  | break; | 
| 335 |  |  | } | 
| 336 |  |  | return 0; | 
| 337 |  |  | } | 
| 338 |  |  |  | 
| 339 |  |  | int MakeStamps::cutoffGroupMembers( event* the_event ){ | 
| 340 |  |  |  | 
| 341 |  |  | int i; | 
| 342 |  |  |  | 
| 343 |  |  | if( the_event->evt.mbrs.nMembers > 0 ){ | 
| 344 |  |  |  | 
| 345 |  |  | for (i = 0; i < the_event->evt.mbrs.nMembers; i++) { | 
| 346 |  |  | current_cutoffgroup->addMember(the_event->evt.mbrs.memberList[i]); | 
| 347 |  |  | } | 
| 348 |  |  |  | 
| 349 |  |  | return 1; | 
| 350 |  |  |  | 
| 351 |  |  | } else { | 
| 352 |  |  | the_event->err_msg = strdup( "MakeStamp error. No members in memberList " | 
| 353 |  |  | " for this CutoffGroup."); | 
| 354 |  |  | return 0; | 
| 355 |  |  |  | 
| 356 |  |  | } | 
| 357 |  |  | } | 
| 358 |  |  |  | 
| 359 |  |  | int MakeStamps::cutoffGroupEnd( event* the_event ){ | 
| 360 |  |  |  | 
| 361 |  |  | the_event->err_msg = current_cutoffgroup->checkMe(); | 
| 362 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 363 |  |  |  | 
| 364 |  |  | return 1; | 
| 365 |  |  | } | 
| 366 |  |  |  | 
| 367 | gezelter | 988 | int MakeStamps::newAtom( event* the_event ){ | 
| 368 | mmeineke | 377 |  | 
| 369 |  |  | current_atom = new AtomStamp; | 
| 370 |  |  |  | 
| 371 |  |  | the_event->err_msg = current_mol->addAtom( current_atom, | 
| 372 |  |  | the_event->evt.blk_index ); | 
| 373 | gezelter | 981 |  | 
| 374 | mmeineke | 377 | if( the_event->err_msg != NULL ) return 0; | 
| 375 |  |  | return 1; | 
| 376 |  |  | } | 
| 377 |  |  |  | 
| 378 |  |  | int MakeStamps::atomPosition( event* the_event ){ | 
| 379 |  |  |  | 
| 380 |  |  | current_atom->setPosition( the_event->evt.pos.x, | 
| 381 |  |  | the_event->evt.pos.y, | 
| 382 |  |  | the_event->evt.pos.z ); | 
| 383 |  |  | return 1; | 
| 384 |  |  | } | 
| 385 |  |  |  | 
| 386 |  |  |  | 
| 387 |  |  | int MakeStamps::atomOrientation( event* the_event ){ | 
| 388 |  |  |  | 
| 389 | gezelter | 998 | current_atom->setOrientation( the_event->evt.ornt.phi, | 
| 390 |  |  | the_event->evt.ornt.theta, | 
| 391 |  |  | the_event->evt.ornt.psi ); | 
| 392 | mmeineke | 377 | return 1; | 
| 393 |  |  | } | 
| 394 |  |  |  | 
| 395 |  |  | int MakeStamps::atomAssign( event* the_event ){ | 
| 396 |  |  |  | 
| 397 |  |  | switch( the_event->evt.asmt.asmt_type ){ | 
| 398 |  |  |  | 
| 399 |  |  | case STRING: | 
| 400 |  |  | the_event->err_msg = | 
| 401 |  |  | current_atom->assignString( the_event->evt.asmt.lhs, | 
| 402 |  |  | the_event->evt.asmt.rhs.sval ); | 
| 403 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 404 |  |  | return 1; | 
| 405 |  |  | break; | 
| 406 |  |  |  | 
| 407 |  |  | case DOUBLE: | 
| 408 |  |  | the_event->err_msg = | 
| 409 |  |  | current_atom->assignDouble( the_event->evt.asmt.lhs, | 
| 410 |  |  | the_event->evt.asmt.rhs.dval ); | 
| 411 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 412 |  |  | return 1; | 
| 413 |  |  | break; | 
| 414 |  |  |  | 
| 415 |  |  | case INT: | 
| 416 |  |  | the_event->err_msg = | 
| 417 |  |  | current_atom->assignInt( the_event->evt.asmt.lhs, | 
| 418 |  |  | the_event->evt.asmt.rhs.ival ); | 
| 419 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 420 |  |  | return 1; | 
| 421 |  |  | break; | 
| 422 |  |  |  | 
| 423 |  |  | default: | 
| 424 |  |  | the_event->err_msg = strdup( "MakeStamp error. Invalid atom" | 
| 425 |  |  | " assignment type" ); | 
| 426 |  |  | return 0; | 
| 427 |  |  | break; | 
| 428 |  |  | } | 
| 429 |  |  | return 0; | 
| 430 |  |  | } | 
| 431 |  |  |  | 
| 432 |  |  | int MakeStamps::atomEnd( event* the_event ){ | 
| 433 |  |  |  | 
| 434 |  |  | the_event->err_msg = current_atom->checkMe(); | 
| 435 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 436 |  |  |  | 
| 437 |  |  | return 1; | 
| 438 |  |  | } | 
| 439 |  |  |  | 
| 440 |  |  | int MakeStamps::newBond( event* the_event ){ | 
| 441 |  |  |  | 
| 442 |  |  | current_bond = new BondStamp; | 
| 443 |  |  |  | 
| 444 |  |  | the_event->err_msg = current_mol->addBond( current_bond, | 
| 445 |  |  | the_event->evt.blk_index ); | 
| 446 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 447 |  |  |  | 
| 448 |  |  | return 1; | 
| 449 |  |  | } | 
| 450 |  |  |  | 
| 451 |  |  | int MakeStamps::bondAssign( event* the_event ){ | 
| 452 |  |  |  | 
| 453 |  |  | switch( the_event->evt.asmt.asmt_type ){ | 
| 454 |  |  |  | 
| 455 |  |  | case STRING: | 
| 456 |  |  | current_bond->assignString( the_event->evt.asmt.lhs, | 
| 457 |  |  | the_event->evt.asmt.rhs.sval ); | 
| 458 |  |  | return 1; | 
| 459 |  |  | break; | 
| 460 |  |  |  | 
| 461 |  |  | case DOUBLE: | 
| 462 |  |  | current_bond->assignDouble( the_event->evt.asmt.lhs, | 
| 463 |  |  | the_event->evt.asmt.rhs.dval ); | 
| 464 |  |  | return 1; | 
| 465 |  |  | break; | 
| 466 |  |  |  | 
| 467 |  |  | case INT: | 
| 468 |  |  | current_bond->assignInt( the_event->evt.asmt.lhs, | 
| 469 |  |  | the_event->evt.asmt.rhs.ival ); | 
| 470 |  |  | return 1; | 
| 471 |  |  | break; | 
| 472 |  |  |  | 
| 473 |  |  | default: | 
| 474 |  |  | the_event->err_msg = strdup( "MakeStamp error. Invalid bond" | 
| 475 |  |  | " assignment type" ); | 
| 476 |  |  | return 0; | 
| 477 |  |  | break; | 
| 478 |  |  | } | 
| 479 |  |  | return 0; | 
| 480 |  |  | } | 
| 481 |  |  |  | 
| 482 | gezelter | 988 | int MakeStamps::bondMembers( event* the_event ){ | 
| 483 | gezelter | 998 |  | 
| 484 |  |  | if( the_event->evt.mbrs.nMembers == 2 ){ | 
| 485 |  |  |  | 
| 486 |  |  | current_bond->members( the_event->evt.mbrs.memberList[0], | 
| 487 |  |  | the_event->evt.mbrs.memberList[1] ); | 
| 488 |  |  | return 1; | 
| 489 | mmeineke | 377 |  | 
| 490 | gezelter | 998 | } else { | 
| 491 |  |  | the_event->err_msg = strdup( "MakeStamp error. Wrong number of members " | 
| 492 |  |  | " in bond"); | 
| 493 |  |  | return 0; | 
| 494 |  |  |  | 
| 495 |  |  | } | 
| 496 |  |  |  | 
| 497 | mmeineke | 377 | } | 
| 498 |  |  |  | 
| 499 |  |  | int MakeStamps::bondConstraint( event* the_event ){ | 
| 500 |  |  |  | 
| 501 |  |  | current_bond->constrain( the_event->evt.cnstr ); | 
| 502 |  |  | return 1; | 
| 503 |  |  | } | 
| 504 |  |  |  | 
| 505 |  |  | int MakeStamps::bondEnd( event* the_event ){ | 
| 506 |  |  |  | 
| 507 |  |  | the_event->err_msg = current_bond->checkMe(); | 
| 508 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 509 |  |  |  | 
| 510 |  |  | return 1; | 
| 511 |  |  | } | 
| 512 |  |  |  | 
| 513 |  |  | int MakeStamps::newBend( event* the_event ){ | 
| 514 |  |  |  | 
| 515 |  |  | current_bend = new BendStamp; | 
| 516 |  |  |  | 
| 517 |  |  | the_event->err_msg = current_mol->addBend( current_bend, | 
| 518 |  |  | the_event->evt.blk_index ); | 
| 519 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 520 |  |  |  | 
| 521 |  |  | return 1; | 
| 522 |  |  | } | 
| 523 |  |  |  | 
| 524 |  |  | int MakeStamps::bendAssign( event* the_event ){ | 
| 525 |  |  |  | 
| 526 |  |  | switch( the_event->evt.asmt.asmt_type ){ | 
| 527 |  |  |  | 
| 528 |  |  | case STRING: | 
| 529 |  |  | current_bend->assignString( the_event->evt.asmt.lhs, | 
| 530 |  |  | the_event->evt.asmt.rhs.sval ); | 
| 531 |  |  | return 1; | 
| 532 |  |  | break; | 
| 533 |  |  |  | 
| 534 |  |  | case DOUBLE: | 
| 535 |  |  | current_bend->assignDouble( the_event->evt.asmt.lhs, | 
| 536 |  |  | the_event->evt.asmt.rhs.dval ); | 
| 537 |  |  | return 1; | 
| 538 |  |  | break; | 
| 539 |  |  |  | 
| 540 |  |  | case INT: | 
| 541 |  |  | current_bend->assignInt( the_event->evt.asmt.lhs, | 
| 542 |  |  | the_event->evt.asmt.rhs.ival ); | 
| 543 |  |  | return 1; | 
| 544 |  |  | break; | 
| 545 |  |  |  | 
| 546 |  |  | default: | 
| 547 |  |  | the_event->err_msg = strdup( "MakeStamp error. Invalid bend" | 
| 548 |  |  | " assignment type" ); | 
| 549 |  |  | return 0; | 
| 550 |  |  | break; | 
| 551 |  |  | } | 
| 552 |  |  | return 0; | 
| 553 |  |  | } | 
| 554 |  |  |  | 
| 555 | gezelter | 988 | int MakeStamps::bendMembers( event* the_event ){ | 
| 556 | mmeineke | 377 |  | 
| 557 | gezelter | 998 |  | 
| 558 |  |  | switch( the_event->evt.mbrs.nMembers ) { | 
| 559 |  |  | case 3: | 
| 560 |  |  | current_bend->members( the_event->evt.mbrs.memberList[0], | 
| 561 |  |  | the_event->evt.mbrs.memberList[1], | 
| 562 |  |  | the_event->evt.mbrs.memberList[2]); | 
| 563 |  |  | return 1; | 
| 564 |  |  | break; | 
| 565 |  |  | case 2: | 
| 566 |  |  | current_bend->members( the_event->evt.mbrs.memberList[0], | 
| 567 |  |  | the_event->evt.mbrs.memberList[1], | 
| 568 |  |  | 0 ); | 
| 569 |  |  | return 1; | 
| 570 |  |  | break; | 
| 571 |  |  | default: | 
| 572 |  |  | the_event->err_msg = strdup( "MakeStamp error. Wrong number of members " | 
| 573 |  |  | "in bend."); | 
| 574 |  |  | return 0; | 
| 575 |  |  | break; | 
| 576 |  |  | } | 
| 577 |  |  | return 0; | 
| 578 | mmeineke | 377 | } | 
| 579 |  |  |  | 
| 580 |  |  | int MakeStamps::bendConstraint( event* the_event ){ | 
| 581 |  |  |  | 
| 582 |  |  | current_bend->constrain( the_event->evt.cnstr ); | 
| 583 |  |  | return 1; | 
| 584 |  |  | } | 
| 585 |  |  |  | 
| 586 |  |  | int MakeStamps::bendEnd( event* the_event ){ | 
| 587 |  |  |  | 
| 588 |  |  | the_event->err_msg = current_bend->checkMe(); | 
| 589 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 590 |  |  |  | 
| 591 |  |  | return 1; | 
| 592 |  |  | } | 
| 593 |  |  |  | 
| 594 |  |  | int MakeStamps::newTorsion( event* the_event ){ | 
| 595 |  |  |  | 
| 596 |  |  | current_torsion = new TorsionStamp; | 
| 597 |  |  |  | 
| 598 |  |  | the_event->err_msg = current_mol->addTorsion( current_torsion, | 
| 599 |  |  | the_event->evt.blk_index ); | 
| 600 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 601 |  |  |  | 
| 602 |  |  | return 1; | 
| 603 |  |  | } | 
| 604 |  |  |  | 
| 605 |  |  | int MakeStamps::torsionAssign( event* the_event ){ | 
| 606 |  |  |  | 
| 607 |  |  | switch( the_event->evt.asmt.asmt_type ){ | 
| 608 |  |  |  | 
| 609 |  |  | case STRING: | 
| 610 |  |  | current_torsion->assignString( the_event->evt.asmt.lhs, | 
| 611 |  |  | the_event->evt.asmt.rhs.sval ); | 
| 612 |  |  | return 1; | 
| 613 |  |  | break; | 
| 614 |  |  |  | 
| 615 |  |  | case DOUBLE: | 
| 616 |  |  | current_torsion->assignDouble( the_event->evt.asmt.lhs, | 
| 617 |  |  | the_event->evt.asmt.rhs.dval ); | 
| 618 |  |  | return 1; | 
| 619 |  |  | break; | 
| 620 |  |  |  | 
| 621 |  |  | case INT: | 
| 622 |  |  | current_torsion->assignInt( the_event->evt.asmt.lhs, | 
| 623 |  |  | the_event->evt.asmt.rhs.ival ); | 
| 624 |  |  | return 1; | 
| 625 |  |  | break; | 
| 626 |  |  |  | 
| 627 |  |  | default: | 
| 628 |  |  | the_event->err_msg = strdup( "MakeStamp error. Invalid torsion" | 
| 629 |  |  | " assignment type" ); | 
| 630 |  |  | return 0; | 
| 631 |  |  | break; | 
| 632 |  |  | } | 
| 633 |  |  | return 0; | 
| 634 |  |  | } | 
| 635 |  |  |  | 
| 636 | gezelter | 988 | int MakeStamps::torsionMembers( event* the_event ){ | 
| 637 | mmeineke | 377 |  | 
| 638 | gezelter | 998 | if( the_event->evt.mbrs.nMembers == 4 ){ | 
| 639 |  |  |  | 
| 640 |  |  | current_torsion->members( the_event->evt.mbrs.memberList[0], | 
| 641 |  |  | the_event->evt.mbrs.memberList[1], | 
| 642 |  |  | the_event->evt.mbrs.memberList[2], | 
| 643 |  |  | the_event->evt.mbrs.memberList[3]); | 
| 644 |  |  | return 1; | 
| 645 |  |  |  | 
| 646 |  |  | } else { | 
| 647 |  |  | the_event->err_msg = strdup( "MakeStamp error. Wrong number of members " | 
| 648 |  |  | " in torsion"); | 
| 649 |  |  | return 0; | 
| 650 |  |  |  | 
| 651 |  |  | } | 
| 652 | mmeineke | 377 | } | 
| 653 |  |  |  | 
| 654 |  |  | int MakeStamps::torsionConstraint( event* the_event ){ | 
| 655 |  |  |  | 
| 656 |  |  | current_torsion->constrain( the_event->evt.cnstr ); | 
| 657 |  |  | return 1; | 
| 658 |  |  | } | 
| 659 |  |  |  | 
| 660 |  |  | int MakeStamps::torsionEnd( event* the_event ){ | 
| 661 |  |  |  | 
| 662 |  |  | the_event->err_msg = current_torsion->checkMe(); | 
| 663 |  |  | if( the_event->err_msg != NULL ) return 0; | 
| 664 |  |  |  | 
| 665 |  |  | return 1; | 
| 666 |  |  | } |