Hopefully this commit included the bass keywords
BASS changes for adding CutoffGroups to molecules. Also restructured the plethora of cutoff radii into one cutoffRadius and one switchingRadius. Also removed the useMolecularCutoffs keyword
useMolecularCutoffs added to Globals
incorporate SMD into ZConstraint,it does not sound a good choice, next commit will seperate SMD and ZConstraint
ZConstraint now can support sequential moving. Refactorying is needed to support SMD in ZConstraint
*** empty log message ***
Add some lines into global.cpp to make it work with energy minimization
BASS changes to add RigidBodies and LJrcut
added the following parameters to BASS: * useInitialExtendedSystemState * orthoBoxTolerance * useIntiTime => useInitialTime
replace c++ header stuff with more portable c header stuff Also, mod file fixes and portability changes
added useInitTime to the BASS syntax. * useInitTime = false: sets the origin time to 0.0 regardless of the time stamp in the .init file * default=> useInitTime = true;
Changes to autoconf / configure method of configuring OOPSE
added resetTime to the Global namespace.
user can setup seed in bass file now, if he does not specify any value for seed, oopse will take the value of seconds of system time as seed
updated the Changelog. added some bug fixes for setting the random number generator seed value.
Tested MPI version of Z-Constraint Method
harmonic potential & z-contraint method
fixed a really annoying bug in Directional Atom, where mu was getting written to pseudorandom memory location.
debugging globals
added harmonical potential to z-constraint method
Added zConstraint into the BASS language syntax.
added z-constraint parameters to the globals
Fixes for NPT / NVT
Fixes for NPT and NVT
Added targetPressure to BASS
electrostatic changes for dipole / RF separation
This commit was generated by cvs2svn to compensate for changes in r377, which included commits to RCS files with non-trunk default branches.
New OOPSE Tree
This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, enter a numeric revision.