| 1 | mmeineke | 377 | #ifndef __GLOBALS_H__ | 
| 2 |  |  | #define __GLOBALS_H__ | 
| 3 |  |  |  | 
| 4 | tim | 689 | #include <iostream> | 
| 5 |  |  |  | 
| 6 | gezelter | 828 | #include <stdlib.h> | 
| 7 | tim | 659 | #include <vector> | 
| 8 | mmeineke | 377 |  | 
| 9 |  |  | #include "BASS_interface.h" | 
| 10 |  |  | #include "Component.hpp" | 
| 11 |  |  | #include "LinkedCommand.hpp" | 
| 12 |  |  | #include "MakeStamps.hpp" | 
| 13 | mmeineke | 675 | #include "ZconStamp.hpp" | 
| 14 | mmeineke | 377 |  | 
| 15 | tim | 659 | using namespace std; | 
| 16 |  |  |  | 
| 17 | mmeineke | 377 | class Globals{ | 
| 18 |  |  |  | 
| 19 |  |  | public: | 
| 20 |  |  |  | 
| 21 |  |  | Globals(); | 
| 22 |  |  | ~Globals(); | 
| 23 | tim | 693 |  | 
| 24 | mmeineke | 377 | int newComponent( event* the_event ); | 
| 25 |  |  | int componentAssign( event* the_event ); | 
| 26 |  |  | int componentEnd( event* the_event ); | 
| 27 | mmeineke | 675 |  | 
| 28 |  |  | int newZconstraint( event* the_event ); | 
| 29 |  |  | int zConstraintAssign( event* the_event ); | 
| 30 |  |  | int zConstraintEnd( event* the_event ); | 
| 31 | mmeineke | 377 |  | 
| 32 |  |  | int globalAssign( event* the_event ); | 
| 33 |  |  | int globalEnd( event* the_event ); | 
| 34 | gezelter | 1260 |  | 
| 35 | mmeineke | 377 | char*  getForceField( void )      { return force_field; } | 
| 36 |  |  | int    getNComponents( void )     { return n_components; } | 
| 37 |  |  | double getTargetTemp( void )      { return target_temp; } | 
| 38 | gezelter | 465 | double getTargetPressure( void )  { return target_pressure; } | 
| 39 | gezelter | 474 | double getQmass( void )           { return q_mass; } | 
| 40 | gezelter | 481 | double getTauThermostat( void )   { return tau_thermostat; } | 
| 41 |  |  | double getTauBarostat( void )     { return tau_barostat; } | 
| 42 | mmeineke | 377 | char*  getEnsemble( void )        { return ensemble; } | 
| 43 |  |  | double getDt( void )              { return dt; } | 
| 44 |  |  | double getRunTime( void )         { return run_time; } | 
| 45 | gezelter | 1153 |  | 
| 46 | mmeineke | 675 | int    getNzConstraints( void )   { return n_zConstraints; } | 
| 47 | mmeineke | 690 | char*  getInitialConfig( void )   { return initial_config; } | 
| 48 | mmeineke | 377 | char*  getFinalConfig( void )     { return final_config; } | 
| 49 |  |  | int    getNMol( void )            { return n_mol; } | 
| 50 |  |  | double getDensity( void )         { return density; } | 
| 51 |  |  | double getBox( void )             { return box; } | 
| 52 |  |  | double getBoxX( void )            { return box_x; } | 
| 53 |  |  | double getBoxY( void )            { return box_y; } | 
| 54 |  |  | double getBoxZ( void )            { return box_z; } | 
| 55 |  |  | double getSampleTime( void )      { return sample_time; } | 
| 56 |  |  | double getStatusTime( void )      { return status_time; } | 
| 57 | mmeineke | 855 | double getResetTime( void )       { return resetTime; } | 
| 58 | mmeineke | 377 | double getThermalTime( void )     { return thermal_time; } | 
| 59 |  |  | double getDielectric( void )      { return dielectric; } | 
| 60 | gezelter | 1153 | double getRcut( void )            { return rcut; } | 
| 61 |  |  | double getRsw( void )             { return rsw; } | 
| 62 | mmeineke | 377 | int    getTempSet( void )         { return tempSet; } | 
| 63 | mmeineke | 855 | int    getUseInitTime( void )     { return useInitTime; } | 
| 64 | gezelter | 1153 | int    getUseInitXSstate( void )  { return useInitXSstate; } | 
| 65 | mmeineke | 855 | double getOrthoBoxTolerance(void) { return orthoBoxTolerance; } | 
| 66 | gezelter | 1153 | int    getPBC( void )             { return usePBC; } | 
| 67 |  |  | int    getUseRF( void )           { return useRF; } | 
| 68 |  |  | char*  getMixingRule( void)       { return mixingRule; } | 
| 69 |  |  | double getZconsTime(void)         { return zcons_time; } | 
| 70 |  |  | double getZconsTol(void)          { return zcons_tol; } | 
| 71 |  |  | char*  getZconsForcePolicy(void)  { return zconsForcePolicy; } | 
| 72 |  |  | double getZconsGap(void)          { return zcons_gap; } | 
| 73 |  |  | double getZconsFixtime(void)      { return zcons_fixtime; } | 
| 74 |  |  | int    getZconsUsingSMD(void)     { return zcons_using_smd; } | 
| 75 |  |  | int    getSeed(void)              { return seed; } | 
| 76 |  |  | char*  getMinimizer(void)         { return minimizer_name; } | 
| 77 |  |  | int    getMinMaxIter(void)        { return minimizer_maxiteration; } | 
| 78 |  |  | int    getMinWriteFrq(void)       { return minimizer_writefrq; } | 
| 79 |  |  | double getMinStepSize(void)       { return minimizer_stepsize; } | 
| 80 |  |  | double getMinFTol(void)           { return minimizer_ftol; } | 
| 81 |  |  | double getMinGTol(void)           { return minimizer_gtol; } | 
| 82 |  |  | double getMinLSTol(void)          { return minimizer_ls_tol; } | 
| 83 |  |  | int    getMinLSMaxIter(void)      { return minimizer_ls_maxiteration; } | 
| 84 | chrisfen | 1209 | int    getUseSolidThermInt(void)  { return useSolidThermInt; } | 
| 85 | chrisfen | 1210 | int    getUseLiquidThermInt(void) { return useLiquidThermInt; } | 
| 86 | chrisfen | 1188 | double getThermIntLambda(void)    { return thermodynamic_integration_lambda; } | 
| 87 |  |  | double getThermIntK(void)         { return thermodynamic_integration_k; } | 
| 88 | gezelter | 1260 | char*  getForceFieldVariant( void ) { return forcefield_variant; } | 
| 89 | tim | 1031 |  | 
| 90 | mmeineke | 377 | short int haveInitialConfig( void ) { return have_initial_config; } | 
| 91 |  |  | short int haveFinalConfig( void )   { return have_final_config; } | 
| 92 |  |  | short int haveNMol( void )          { return have_n_mol; } | 
| 93 |  |  | short int haveDensity( void )       { return have_density; } | 
| 94 |  |  | short int haveBox( void )           { return have_box; } | 
| 95 |  |  | short int haveBoxX( void )          { return have_box_x; } | 
| 96 |  |  | short int haveBoxY( void )          { return have_box_y; } | 
| 97 |  |  | short int haveBoxZ( void )          { return have_box_z; } | 
| 98 |  |  | short int haveSampleTime( void )    { return have_sample_time; } | 
| 99 | mmeineke | 745 | short int haveResetTime( void )     { return have_reset_time; } | 
| 100 | mmeineke | 377 | short int haveStatusTime( void )    { return have_status_time; } | 
| 101 |  |  | short int haveThermalTime( void )   { return have_thermal_time; } | 
| 102 | gezelter | 1153 | short int haveRcut( void )          { return have_rcut; } | 
| 103 |  |  | short int haveRsw( void )           { return have_rsw; } | 
| 104 | mmeineke | 377 | short int haveDielectric( void )    { return have_dielectric; } | 
| 105 |  |  | short int haveTempSet( void )       { return have_tempSet; } | 
| 106 | gezelter | 474 | short int haveTargetPressure( void ){ return have_target_pressure; } | 
| 107 |  |  | short int haveQmass( void )         { return have_q_mass; } | 
| 108 | gezelter | 1153 | short int haveTauThermostat( void ) { return have_tau_thermostat; } | 
| 109 |  |  | short int haveTauBarostat( void )   { return have_tau_barostat; } | 
| 110 | tim | 682 | short int haveZconstraintTime(void) { return have_zcons_time; } | 
| 111 | gezelter | 1153 | short int haveZconstraints( void )  { return have_zConstraints; } | 
| 112 |  |  | short int haveZconsTol(void)        { return have_zcons_tol; } | 
| 113 |  |  | short int haveZconsForcePolicy(void){ return have_zcons_force_policy; } | 
| 114 |  |  | short int haveZConsGap(void)        { return have_zcons_gap; } | 
| 115 |  |  | short int haveZConsFixTime(void)    { return have_zcons_fixtime; } | 
| 116 |  |  | short int haveZConsUsingSMD(void)   { return have_zcons_using_smd; } | 
| 117 |  |  | short int haveSeed(void)            { return have_seed; } | 
| 118 |  |  | short int haveMinimizer(void)       { return have_minimizer; } | 
| 119 |  |  | short int haveMinMaxIter(void)      { return have_minimizer_maxiteration; } | 
| 120 |  |  | short int haveMinWriteFrq(void)     { return have_minimizer_writefrq; } | 
| 121 |  |  | short int haveMinStepSize(void)     { return have_minimizer_stepsize; } | 
| 122 |  |  | short int haveMinFTol(void)         { return have_minimizer_ftol; } | 
| 123 |  |  | short int haveMinGTol(void)         { return have_minimizer_gtol; } | 
| 124 |  |  | short int haveMinLSTol(void)        { return have_minimizer_ls_tol; } | 
| 125 |  |  | short int haveMinLSMaxIter(void)    { return have_minimizer_ls_maxiteration;} | 
| 126 | chrisfen | 1188 | short int haveThermIntLambda(void)  { return have_thermodynamic_integration_lambda; } | 
| 127 |  |  | short int haveThermIntK(void)       { return have_thermodynamic_integration_k; } | 
| 128 | gezelter | 1260 | short int haveForceFieldVariant(void) { return have_forcefield_variant; } | 
| 129 | gezelter | 1137 |  | 
| 130 | mmeineke | 377 | /* other accessors */ | 
| 131 | mmeineke | 855 | Component** getComponents( void )   { return components; } | 
| 132 |  |  | ZconStamp** getZconStamp( void )    { return zConstraints; } | 
| 133 | mmeineke | 377 |  | 
| 134 |  |  | private: | 
| 135 |  |  |  | 
| 136 | gezelter | 747 | int hash_size; | 
| 137 |  |  | int hash_shift; | 
| 138 | mmeineke | 377 | int hash( char* text ); | 
| 139 |  |  | void addHash( char* text, int token ); | 
| 140 |  |  | LinkedCommand** command_table; | 
| 141 |  |  |  | 
| 142 |  |  | char* checkMe( void ); | 
| 143 |  |  |  | 
| 144 |  |  | Component* current_component; | 
| 145 |  |  | Component** components; // the array of components | 
| 146 | mmeineke | 675 |  | 
| 147 |  |  | ZconStamp* current_zConstraint; | 
| 148 |  |  | ZconStamp** zConstraints; // the array of zConstraints | 
| 149 |  |  |  | 
| 150 | mmeineke | 377 | char force_field[100]; | 
| 151 |  |  | int n_components; | 
| 152 | mmeineke | 675 | int n_zConstraints; | 
| 153 | mmeineke | 377 | double target_temp; | 
| 154 | gezelter | 465 | double target_pressure; | 
| 155 | mmeineke | 377 | char ensemble[100]; | 
| 156 |  |  | char mixingRule[100]; | 
| 157 |  |  | double dt; | 
| 158 |  |  | double run_time; | 
| 159 |  |  | char initial_config[120]; | 
| 160 |  |  | char final_config[120]; | 
| 161 |  |  | int n_mol; | 
| 162 |  |  | double density; | 
| 163 |  |  | double box; | 
| 164 |  |  | double box_x, box_y, box_z; | 
| 165 |  |  | double sample_time; | 
| 166 |  |  | double status_time; | 
| 167 | mmeineke | 745 | double resetTime; | 
| 168 | mmeineke | 855 | double orthoBoxTolerance; | 
| 169 | mmeineke | 377 | double thermal_time; | 
| 170 | gezelter | 1153 | double rcut; | 
| 171 |  |  | double rsw; | 
| 172 | mmeineke | 377 | double dielectric; | 
| 173 |  |  | int tempSet; | 
| 174 | mmeineke | 811 | int useInitTime; | 
| 175 | mmeineke | 855 | int useInitXSstate; | 
| 176 | mmeineke | 377 | int usePBC; | 
| 177 | gezelter | 394 | int useRF; | 
| 178 | gezelter | 474 | double q_mass; | 
| 179 | gezelter | 481 | double tau_thermostat; | 
| 180 |  |  | double tau_barostat; | 
| 181 | tim | 682 | double zcons_time; | 
| 182 |  |  | double zcons_tol; | 
| 183 | tim | 699 | char zconsForcePolicy[100]; | 
| 184 | tim | 1091 | double zcons_gap; | 
| 185 |  |  | double zcons_fixtime; | 
| 186 | tim | 1093 | int zcons_using_smd; | 
| 187 | tim | 1091 |  | 
| 188 | mmeineke | 706 | int seed; | 
| 189 | tim | 1031 | char minimizer_name[100]; | 
| 190 |  |  | int minimizer_maxiteration; | 
| 191 |  |  | int minimizer_writefrq; | 
| 192 | tim | 1066 | double minimizer_stepsize; | 
| 193 | tim | 1031 | double minimizer_ftol; | 
| 194 |  |  | double minimizer_gtol; | 
| 195 |  |  | double minimizer_ls_tol; | 
| 196 |  |  | int minimizer_ls_maxiteration; | 
| 197 | chrisfen | 1209 | int useSolidThermInt; | 
| 198 | chrisfen | 1210 | int useLiquidThermInt; | 
| 199 | chrisfen | 1181 | double thermodynamic_integration_lambda; | 
| 200 |  |  | double thermodynamic_integration_k; | 
| 201 | gezelter | 1260 | char forcefield_variant[100]; | 
| 202 | chrisfen | 1181 |  | 
| 203 | mmeineke | 377 | //required arguments | 
| 204 |  |  | short int have_force_field, have_n_components, have_target_temp; | 
| 205 | gezelter | 465 | short int have_target_pressure, have_ensemble, have_dt, have_run_time; | 
| 206 | mmeineke | 377 |  | 
| 207 |  |  | // optional arguments | 
| 208 |  |  | short int have_initial_config, have_final_config, have_n_mol; | 
| 209 |  |  | short int have_density, have_box, have_box_x, have_box_y, have_box_z; | 
| 210 | gezelter | 1153 | short int have_sample_time, have_status_time, have_rcut, have_dielectric; | 
| 211 |  |  | short int have_tempSet, have_thermal_time, have_rsw, have_q_mass; | 
| 212 | gezelter | 481 | short int have_tau_thermostat, have_tau_barostat; | 
| 213 | mmeineke | 706 | short int have_zcons_time, have_zConstraints, have_n_zConstraints; | 
| 214 | gezelter | 1153 | short int have_zcons_tol, have_seed; | 
| 215 | mmeineke | 745 | short int have_zcons_force_policy, have_reset_time; | 
| 216 | tim | 1091 | short int have_zcons_gap, have_zcons_fixtime; | 
| 217 | tim | 1093 | short int have_zcons_using_smd; | 
| 218 | tim | 1031 | short int have_minimizer, have_minimizer_maxiteration; | 
| 219 | tim | 1066 | short int have_minimizer_writefrq, have_minimizer_stepsize; | 
| 220 | tim | 1031 | short int have_minimizer_ftol, have_minimizer_gtol; | 
| 221 |  |  | short int have_minimizer_ls_tol, have_minimizer_ls_maxiteration; | 
| 222 | chrisfen | 1181 | short int have_thermodynamic_integration_lambda; | 
| 223 |  |  | short int have_thermodynamic_integration_k; | 
| 224 | gezelter | 1260 | short int have_forcefield_variant; | 
| 225 | mmeineke | 377 | }; | 
| 226 |  |  |  | 
| 227 |  |  | #endif |