25 |
|
#define G_RUNTIME 6 |
26 |
|
|
27 |
|
//optional parameters |
28 |
< |
#define G_INITIALCONFIG 7 |
29 |
< |
#define G_FINALCONFIG 8 |
30 |
< |
#define G_NMOL 9 |
31 |
< |
#define G_DENSITY 10 |
32 |
< |
#define G_BOX 11 |
33 |
< |
#define G_BOXX 12 |
34 |
< |
#define G_BOXY 13 |
35 |
< |
#define G_BOXZ 14 |
36 |
< |
#define G_SAMPLETIME 15 |
37 |
< |
#define G_STATUSTIME 16 |
38 |
< |
#define G_RRF 17 |
39 |
< |
#define G_DIELECTRIC 18 |
40 |
< |
#define G_TEMPSET 19 |
41 |
< |
#define G_THERMALTIME 20 |
42 |
< |
#define G_USEPBC 21 |
43 |
< |
#define G_MIXINGRULE 22 |
28 |
> |
#define G_INITIALCONFIG 7 |
29 |
> |
#define G_FINALCONFIG 8 |
30 |
> |
#define G_NMOL 9 |
31 |
> |
#define G_DENSITY 10 |
32 |
> |
#define G_BOX 11 |
33 |
> |
#define G_BOXX 12 |
34 |
> |
#define G_BOXY 13 |
35 |
> |
#define G_BOXZ 14 |
36 |
> |
#define G_SAMPLETIME 15 |
37 |
> |
#define G_STATUSTIME 16 |
38 |
> |
#define G_ECR 17 |
39 |
> |
#define G_DIELECTRIC 18 |
40 |
> |
#define G_TEMPSET 19 |
41 |
> |
#define G_THERMALTIME 20 |
42 |
> |
#define G_USEPBC 21 |
43 |
> |
#define G_MIXINGRULE 22 |
44 |
> |
#define G_EST 23 |
45 |
> |
#define G_USERF 24 |
46 |
> |
#define G_TARGETPRESSURE 25 |
47 |
> |
#define G_TAUTHERMOSTAT 26 |
48 |
> |
#define G_TAUBAROSTAT 27 |
49 |
> |
#define G_ZCONSTIME 28 |
50 |
> |
#define G_NZCONSTRAINTS 29 |
51 |
> |
#define G_ZCONSTOL 30 |
52 |
|
|
45 |
– |
|
53 |
|
Globals::Globals(){ |
54 |
|
|
55 |
|
int i; |
77 |
|
addHash( "boxZ", G_BOXZ ); |
78 |
|
addHash( "sampleTime", G_SAMPLETIME ); |
79 |
|
addHash( "statusTime", G_STATUSTIME ); |
80 |
< |
addHash( "rRF", G_RRF ); |
80 |
> |
addHash( "electrostaticCutoffRadius", G_ECR ); |
81 |
|
addHash( "dielectric", G_DIELECTRIC ); |
82 |
|
addHash( "tempSet", G_TEMPSET ); |
83 |
|
addHash( "thermalTime", G_THERMALTIME ); |
84 |
|
addHash( "mixingRule", G_MIXINGRULE); |
85 |
< |
addHash( "periodicBox", G_USEPBC); |
86 |
< |
|
85 |
> |
addHash( "usePeriodicBoundaryConditions", G_USEPBC); |
86 |
> |
addHash( "electrostaticSkinThickness", G_EST ); |
87 |
> |
addHash( "useReactionField", G_USERF ); |
88 |
> |
addHash( "targetPressure", G_TARGETPRESSURE); |
89 |
> |
addHash( "tauThermostat", G_TAUTHERMOSTAT); |
90 |
> |
addHash( "tauBarostat", G_TAUBAROSTAT); |
91 |
> |
addHash( "zconsTime", G_ZCONSTIME); |
92 |
> |
addHash( "nZconstraints", G_NZCONSTRAINTS); |
93 |
> |
addHash( "zconsTol", G_ZCONSTOL); |
94 |
> |
|
95 |
|
// define some default values |
96 |
|
|
97 |
|
strcpy( mixingRule,"standard"); //default mixing rules to standard. |
98 |
|
usePBC = 1; //default periodic boundry conditions to on |
99 |
+ |
useRF = 0; |
100 |
|
|
85 |
– |
|
101 |
|
have_force_field = 0; |
102 |
|
have_n_components = 0; |
103 |
|
have_target_temp = 0; |
117 |
|
have_sample_time = 0; |
118 |
|
have_status_time = 0; |
119 |
|
have_thermal_time = 0; |
120 |
< |
have_rrf = 0; |
120 |
> |
have_ecr = 0; |
121 |
|
have_dielectric = 0; |
122 |
|
have_tempSet = 0; |
123 |
+ |
have_est = 0; |
124 |
+ |
have_target_pressure =0; |
125 |
+ |
have_q_mass = 0; |
126 |
+ |
have_tau_thermostat = 0; |
127 |
+ |
have_tau_barostat = 0; |
128 |
+ |
have_zcons_time = 0; |
129 |
+ |
have_n_zConstraints = 0; |
130 |
+ |
have_zConstraints = 0; |
131 |
+ |
have_zcons_tol = 0; |
132 |
|
} |
133 |
|
|
134 |
|
Globals::~Globals(){ |
203 |
|
return 0; |
204 |
|
} |
205 |
|
|
206 |
< |
int Globals::componentStartIndex( event* the_event ){ |
206 |
> |
int Globals::componentEnd( event* the_event ){ |
207 |
|
|
208 |
< |
current_component->startIndex( the_event->evt.si.array, |
209 |
< |
the_event->evt.si.n_elements ); |
208 |
> |
the_event->err_msg = current_component->checkMe(); |
209 |
> |
if( the_event->err_msg != NULL ) return 0; |
210 |
> |
|
211 |
|
return 1; |
212 |
|
} |
213 |
|
|
214 |
< |
int Globals::componentEnd( event* the_event ){ |
214 |
> |
int Globals::newZconstraint( event* the_event ){ |
215 |
> |
|
216 |
|
|
217 |
< |
the_event->err_msg = current_component->checkMe(); |
217 |
> |
int index = the_event->evt.blk_index; |
218 |
> |
char err[200]; |
219 |
> |
current_zConstraint = new ZconStamp( index ); |
220 |
> |
|
221 |
> |
have_zConstraints = 1; |
222 |
> |
|
223 |
> |
if( have_n_zConstraints && index < n_zConstraints ) |
224 |
> |
zConstraints[index] = current_zConstraint; |
225 |
> |
else{ |
226 |
> |
if( have_n_zConstraints ){ |
227 |
> |
sprintf( err, "Globals error, %d out of nZconstraints range", |
228 |
> |
index ); |
229 |
> |
the_event->err_msg = strdup( err ); |
230 |
> |
return 0; |
231 |
> |
} |
232 |
> |
else{ |
233 |
> |
the_event->err_msg = strdup("Globals error, nZconstraints" |
234 |
> |
" not given before" |
235 |
> |
" first zConstraint declaration." ); |
236 |
> |
return 0; |
237 |
> |
} |
238 |
> |
} |
239 |
> |
|
240 |
> |
return 1; |
241 |
> |
} |
242 |
> |
|
243 |
> |
|
244 |
> |
|
245 |
> |
int Globals::zConstraintAssign( event* the_event ){ |
246 |
> |
|
247 |
> |
switch( the_event->evt.asmt.asmt_type ){ |
248 |
> |
|
249 |
> |
case STRING: |
250 |
> |
return current_zConstraint->assignString( the_event->evt.asmt.lhs, |
251 |
> |
the_event->evt.asmt.rhs.sval, |
252 |
> |
&(the_event->err_msg)); |
253 |
> |
break; |
254 |
> |
|
255 |
> |
case DOUBLE: |
256 |
> |
return current_zConstraint->assignDouble( the_event->evt.asmt.lhs, |
257 |
> |
the_event->evt.asmt.rhs.dval, |
258 |
> |
&(the_event->err_msg)); |
259 |
> |
break; |
260 |
> |
|
261 |
> |
case INT: |
262 |
> |
return current_zConstraint->assignInt( the_event->evt.asmt.lhs, |
263 |
> |
the_event->evt.asmt.rhs.ival, |
264 |
> |
&(the_event->err_msg)); |
265 |
> |
break; |
266 |
> |
|
267 |
> |
default: |
268 |
> |
the_event->err_msg = strdup( "Globals error. Invalid zConstraint" |
269 |
> |
" assignment type" ); |
270 |
> |
return 0; |
271 |
> |
break; |
272 |
> |
} |
273 |
> |
return 0; |
274 |
> |
} |
275 |
> |
|
276 |
> |
int Globals::zConstraintEnd( event* the_event ){ |
277 |
> |
|
278 |
> |
the_event->err_msg = current_zConstraint->checkMe(); |
279 |
|
if( the_event->err_msg != NULL ) return 0; |
280 |
|
|
281 |
|
return 1; |
330 |
|
return 1; |
331 |
|
} |
332 |
|
break; |
333 |
+ |
|
334 |
+ |
case G_NZCONSTRAINTS: |
335 |
+ |
if( the_type == STRING ){ |
336 |
+ |
the_event->err_msg = |
337 |
+ |
strdup("Global error. nZconstraints is not a double or an int.\n" ); |
338 |
+ |
return 0; |
339 |
+ |
} |
340 |
|
|
341 |
+ |
else if( the_type == DOUBLE ){ |
342 |
+ |
n_zConstraints = (int)the_event->evt.asmt.rhs.dval; |
343 |
+ |
zConstraints = new ZconStamp*[n_zConstraints]; |
344 |
+ |
have_n_zConstraints = 1; |
345 |
+ |
return 1; |
346 |
+ |
} |
347 |
+ |
|
348 |
+ |
else{ |
349 |
+ |
n_zConstraints = the_event->evt.asmt.rhs.ival; |
350 |
+ |
zConstraints = new ZconStamp*[n_zConstraints]; |
351 |
+ |
have_n_zConstraints = 1; |
352 |
+ |
return 1; |
353 |
+ |
} |
354 |
+ |
break; |
355 |
+ |
|
356 |
|
case G_TARGETTEMP: |
357 |
|
switch( the_type ){ |
358 |
|
|
748 |
|
} |
749 |
|
break; |
750 |
|
|
751 |
< |
case G_RRF: |
751 |
> |
case G_ECR: |
752 |
|
switch( the_type ){ |
753 |
|
|
754 |
|
case STRING: |
755 |
|
the_event->err_msg = |
756 |
< |
strdup( "Global error. rRF is not a double or int.\n" ); |
756 |
> |
strdup( "Global error. electrostaticCutoffRadius is not a double or int.\n" ); |
757 |
|
return 0; |
758 |
|
break; |
759 |
|
|
760 |
|
case DOUBLE: |
761 |
< |
rRF = the_event->evt.asmt.rhs.dval; |
762 |
< |
have_rrf = 1; |
761 |
> |
ecr = the_event->evt.asmt.rhs.dval; |
762 |
> |
have_ecr = 1; |
763 |
|
return 1; |
764 |
|
break; |
765 |
|
|
766 |
|
case INT: |
767 |
< |
rRF = (double)the_event->evt.asmt.rhs.ival; |
768 |
< |
have_rrf = 1; |
767 |
> |
ecr = (double)the_event->evt.asmt.rhs.ival; |
768 |
> |
have_ecr = 1; |
769 |
|
return 1; |
770 |
|
break; |
771 |
|
|
772 |
|
default: |
773 |
|
the_event->err_msg = |
774 |
< |
strdup( "Global error. rRF unrecognized.\n" ); |
774 |
> |
strdup( "Global error. electrostaticCutoffRadius unrecognized.\n" ); |
775 |
|
return 0; |
776 |
|
break; |
777 |
|
} |
778 |
|
break; |
779 |
+ |
|
780 |
+ |
case G_EST: |
781 |
+ |
switch( the_type ){ |
782 |
+ |
|
783 |
+ |
case STRING: |
784 |
+ |
the_event->err_msg = |
785 |
+ |
strdup( "Global error. electrostaticSkinThickness is not a double or int.\n" ); |
786 |
+ |
return 0; |
787 |
+ |
break; |
788 |
+ |
|
789 |
+ |
case DOUBLE: |
790 |
+ |
est = the_event->evt.asmt.rhs.dval; |
791 |
+ |
have_est = 1; |
792 |
+ |
return 1; |
793 |
+ |
break; |
794 |
+ |
|
795 |
+ |
case INT: |
796 |
+ |
est = (double)the_event->evt.asmt.rhs.ival; |
797 |
+ |
have_est = 1; |
798 |
+ |
return 1; |
799 |
+ |
break; |
800 |
+ |
|
801 |
+ |
default: |
802 |
+ |
the_event->err_msg = |
803 |
+ |
strdup( "Global error. electrostaticSkinThickness unrecognized.\n" ); |
804 |
+ |
return 0; |
805 |
+ |
break; |
806 |
+ |
} |
807 |
+ |
break; |
808 |
|
|
809 |
|
case G_DIELECTRIC: |
810 |
|
switch( the_type ){ |
838 |
|
case G_TEMPSET: |
839 |
|
if( the_type == STRING ){ |
840 |
|
|
841 |
< |
if( !strcmp( "true", the_event->evt.asmt.rhs.sval )) tempSet = 1; |
842 |
< |
else if( !strcmp( "false", the_event->evt.asmt.rhs.sval )) tempSet = 0; |
841 |
> |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) tempSet = 1; |
842 |
> |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) tempSet = 0; |
843 |
|
else{ |
844 |
|
the_event->err_msg = |
845 |
|
strdup( "Global error. tempSet was not \"true\" or \"false\".\n" ); |
857 |
|
case G_USEPBC: |
858 |
|
if( the_type == STRING ){ |
859 |
|
|
860 |
< |
if( !strcmp( "true", the_event->evt.asmt.rhs.sval )) usePBC = 1; |
861 |
< |
else if( !strcmp( "false", the_event->evt.asmt.rhs.sval )) usePBC = 0; |
860 |
> |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) usePBC = 1; |
861 |
> |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) usePBC = 0; |
862 |
|
else{ |
863 |
|
the_event->err_msg = |
864 |
< |
strdup( "Global error. periodicBoundryConditions was not \"true\" or \"false\".\n" ); |
864 |
> |
strdup( "Global error. usePeriodicBoundaryConditions was not \"true\" or \"false\".\n" ); |
865 |
|
return 0; |
866 |
|
} |
867 |
|
return 1; |
868 |
|
} |
869 |
|
|
870 |
|
the_event->err_msg = |
871 |
< |
strdup( "Global error. tempSet was not \"true\" or \"false\".\n" ); |
871 |
> |
strdup( "Global error. usePeriodicBoundaryConditions was not \"true\" or \"false\".\n" ); |
872 |
|
return 0; |
873 |
+ |
break; |
874 |
+ |
|
875 |
+ |
case G_USERF: |
876 |
+ |
if( the_type == STRING ){ |
877 |
+ |
|
878 |
+ |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useRF = 1; |
879 |
+ |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useRF = 0; |
880 |
+ |
else{ |
881 |
+ |
the_event->err_msg = |
882 |
+ |
strdup( "Global error. useReactionField was not \"true\" or \"false\".\n" ); |
883 |
+ |
return 0; |
884 |
+ |
} |
885 |
+ |
return 1; |
886 |
+ |
} |
887 |
+ |
|
888 |
+ |
the_event->err_msg = |
889 |
+ |
strdup( "Global error. useReactionField was not \"true\" or \"false\".\n" ); |
890 |
+ |
return 0; |
891 |
+ |
break; |
892 |
+ |
|
893 |
+ |
case G_TARGETPRESSURE: |
894 |
+ |
switch( the_type ){ |
895 |
+ |
|
896 |
+ |
case STRING: |
897 |
+ |
the_event->err_msg = |
898 |
+ |
strdup( "Global error. targetPressure is not a double or int.\n" ); |
899 |
+ |
return 0; |
900 |
+ |
break; |
901 |
+ |
|
902 |
+ |
case DOUBLE: |
903 |
+ |
target_pressure = the_event->evt.asmt.rhs.dval; |
904 |
+ |
have_target_pressure = 1; |
905 |
+ |
return 1; |
906 |
+ |
break; |
907 |
+ |
|
908 |
+ |
case INT: |
909 |
+ |
target_pressure = (double)the_event->evt.asmt.rhs.ival; |
910 |
+ |
have_target_pressure = 1; |
911 |
+ |
return 1; |
912 |
+ |
break; |
913 |
+ |
|
914 |
+ |
default: |
915 |
+ |
the_event->err_msg = |
916 |
+ |
strdup( "Global error. targetPressure unrecognized.\n" ); |
917 |
+ |
return 0; |
918 |
+ |
break; |
919 |
+ |
} |
920 |
+ |
break; |
921 |
+ |
|
922 |
+ |
case G_TAUTHERMOSTAT: |
923 |
+ |
switch( the_type ){ |
924 |
+ |
|
925 |
+ |
case STRING: |
926 |
+ |
the_event->err_msg = |
927 |
+ |
strdup( "Global error. tauThermostat is not a double or int.\n" ); |
928 |
+ |
return 0; |
929 |
+ |
break; |
930 |
+ |
|
931 |
+ |
case DOUBLE: |
932 |
+ |
tau_thermostat = the_event->evt.asmt.rhs.dval; |
933 |
+ |
have_tau_thermostat = 1; |
934 |
+ |
return 1; |
935 |
+ |
break; |
936 |
+ |
|
937 |
+ |
case INT: |
938 |
+ |
tau_thermostat = (double)the_event->evt.asmt.rhs.ival; |
939 |
+ |
have_tau_thermostat = 1; |
940 |
+ |
return 1; |
941 |
+ |
break; |
942 |
+ |
|
943 |
+ |
default: |
944 |
+ |
the_event->err_msg = |
945 |
+ |
strdup( "Global error. tauThermostat unrecognized.\n" ); |
946 |
+ |
return 0; |
947 |
+ |
break; |
948 |
+ |
} |
949 |
|
break; |
950 |
+ |
|
951 |
+ |
case G_TAUBAROSTAT: |
952 |
+ |
switch( the_type ){ |
953 |
+ |
|
954 |
+ |
case STRING: |
955 |
+ |
the_event->err_msg = |
956 |
+ |
strdup( "Global error. tauBarostat is not a double or int.\n" ); |
957 |
+ |
return 0; |
958 |
+ |
break; |
959 |
+ |
|
960 |
+ |
case DOUBLE: |
961 |
+ |
tau_barostat = the_event->evt.asmt.rhs.dval; |
962 |
+ |
have_tau_barostat = 1; |
963 |
+ |
return 1; |
964 |
+ |
break; |
965 |
+ |
|
966 |
+ |
case INT: |
967 |
+ |
tau_barostat = (double)the_event->evt.asmt.rhs.ival; |
968 |
+ |
have_tau_barostat = 1; |
969 |
+ |
return 1; |
970 |
+ |
break; |
971 |
+ |
|
972 |
+ |
default: |
973 |
+ |
the_event->err_msg = |
974 |
+ |
strdup( "Global error. tauBarostat unrecognized.\n" ); |
975 |
+ |
return 0; |
976 |
+ |
break; |
977 |
+ |
} |
978 |
+ |
break; |
979 |
+ |
|
980 |
+ |
case G_ZCONSTIME: |
981 |
+ |
switch( the_type ){ |
982 |
+ |
|
983 |
+ |
case STRING: |
984 |
+ |
the_event->err_msg = |
985 |
+ |
strdup( "Global error. zcons_time is not a double or int.\n" ); |
986 |
+ |
return 0; |
987 |
+ |
break; |
988 |
+ |
|
989 |
+ |
case DOUBLE: |
990 |
+ |
zcons_time = the_event->evt.asmt.rhs.dval; |
991 |
+ |
have_zcons_time = 1; |
992 |
+ |
return 1; |
993 |
+ |
break; |
994 |
+ |
|
995 |
+ |
case INT: |
996 |
+ |
zcons_time = (double)the_event->evt.asmt.rhs.ival; |
997 |
+ |
have_zcons_time = 1; |
998 |
+ |
return 1; |
999 |
+ |
break; |
1000 |
+ |
|
1001 |
+ |
default: |
1002 |
+ |
the_event->err_msg = |
1003 |
+ |
strdup( "Global error. zcons_time unrecognized.\n" ); |
1004 |
+ |
return 0; |
1005 |
+ |
break; |
1006 |
+ |
} |
1007 |
+ |
break; |
1008 |
+ |
|
1009 |
+ |
case G_ZCONSTOL: |
1010 |
+ |
switch( the_type ){ |
1011 |
+ |
|
1012 |
+ |
case STRING: |
1013 |
+ |
the_event->err_msg = |
1014 |
+ |
strdup( "Global error. zcons_tol is not a double or int.\n" ); |
1015 |
+ |
return 0; |
1016 |
+ |
break; |
1017 |
+ |
|
1018 |
+ |
case DOUBLE: |
1019 |
+ |
zcons_tol = the_event->evt.asmt.rhs.dval; |
1020 |
+ |
have_zcons_tol = 1; |
1021 |
+ |
return 1; |
1022 |
+ |
break; |
1023 |
+ |
|
1024 |
+ |
case INT: |
1025 |
+ |
zcons_tol = (double)the_event->evt.asmt.rhs.ival; |
1026 |
+ |
have_zcons_tol = 1; |
1027 |
+ |
return 1; |
1028 |
+ |
break; |
1029 |
+ |
|
1030 |
+ |
default: |
1031 |
+ |
the_event->err_msg = |
1032 |
+ |
strdup( "Global error. zcons_ol unrecognized.\n" ); |
1033 |
+ |
return 0; |
1034 |
+ |
break; |
1035 |
+ |
} |
1036 |
+ |
break; |
1037 |
+ |
|
1038 |
+ |
|
1039 |
+ |
// add more token cases here. |
1040 |
+ |
|
1041 |
|
} |
1042 |
|
} |
1043 |
|
|