25 |
|
#define G_RUNTIME 6 |
26 |
|
|
27 |
|
//optional parameters |
28 |
< |
#define G_INITIALCONFIG 7 |
29 |
< |
#define G_FINALCONFIG 8 |
30 |
< |
#define G_NMOL 9 |
31 |
< |
#define G_DENSITY 10 |
32 |
< |
#define G_BOX 11 |
33 |
< |
#define G_BOXX 12 |
34 |
< |
#define G_BOXY 13 |
35 |
< |
#define G_BOXZ 14 |
36 |
< |
#define G_SAMPLETIME 15 |
37 |
< |
#define G_STATUSTIME 16 |
38 |
< |
#define G_RRF 17 |
39 |
< |
#define G_DIELECTRIC 18 |
40 |
< |
#define G_TEMPSET 19 |
41 |
< |
#define G_THERMALTIME 20 |
42 |
< |
#define G_USEPBC 21 |
43 |
< |
#define G_MIXINGRULE 22 |
28 |
> |
#define G_INITIALCONFIG 7 |
29 |
> |
#define G_FINALCONFIG 8 |
30 |
> |
#define G_NMOL 9 |
31 |
> |
#define G_DENSITY 10 |
32 |
> |
#define G_BOX 11 |
33 |
> |
#define G_BOXX 12 |
34 |
> |
#define G_BOXY 13 |
35 |
> |
#define G_BOXZ 14 |
36 |
> |
#define G_SAMPLETIME 15 |
37 |
> |
#define G_STATUSTIME 16 |
38 |
> |
#define G_ECR 17 |
39 |
> |
#define G_DIELECTRIC 18 |
40 |
> |
#define G_TEMPSET 19 |
41 |
> |
#define G_THERMALTIME 20 |
42 |
> |
#define G_USEPBC 21 |
43 |
> |
#define G_MIXINGRULE 22 |
44 |
> |
#define G_EST 23 |
45 |
> |
#define G_USERF 24 |
46 |
> |
#define G_TARGETPRESSURE 25 |
47 |
> |
#define G_QMASS 26 |
48 |
> |
#define G_TAUTHERMOSTAT 27 |
49 |
> |
#define G_TAUBAROSTAT 28 |
50 |
|
|
51 |
|
|
52 |
|
Globals::Globals(){ |
76 |
|
addHash( "boxZ", G_BOXZ ); |
77 |
|
addHash( "sampleTime", G_SAMPLETIME ); |
78 |
|
addHash( "statusTime", G_STATUSTIME ); |
79 |
< |
addHash( "rRF", G_RRF ); |
79 |
> |
addHash( "electrostaticCutoffRadius", G_ECR ); |
80 |
|
addHash( "dielectric", G_DIELECTRIC ); |
81 |
|
addHash( "tempSet", G_TEMPSET ); |
82 |
|
addHash( "thermalTime", G_THERMALTIME ); |
83 |
|
addHash( "mixingRule", G_MIXINGRULE); |
84 |
< |
addHash( "periodicBox", G_USEPBC); |
84 |
> |
addHash( "usePeriodicBoundaryConditions", G_USEPBC); |
85 |
> |
addHash( "electrostaticSkinThickness", G_EST ); |
86 |
> |
addHash( "useReactionField", G_USERF ); |
87 |
> |
addHash( "targetPressure", G_TARGETPRESSURE); |
88 |
> |
addHash( "qMass", G_QMASS); |
89 |
> |
addHash( "tauThermostat", G_TAUTHERMOSTAT); |
90 |
> |
addHash( "tauBarostat", G_TAUBAROSTAT); |
91 |
|
|
92 |
|
// define some default values |
93 |
|
|
94 |
|
strcpy( mixingRule,"standard"); //default mixing rules to standard. |
95 |
|
usePBC = 1; //default periodic boundry conditions to on |
96 |
+ |
useRF = 0; |
97 |
|
|
85 |
– |
|
98 |
|
have_force_field = 0; |
99 |
|
have_n_components = 0; |
100 |
|
have_target_temp = 0; |
114 |
|
have_sample_time = 0; |
115 |
|
have_status_time = 0; |
116 |
|
have_thermal_time = 0; |
117 |
< |
have_rrf = 0; |
117 |
> |
have_ecr = 0; |
118 |
|
have_dielectric = 0; |
119 |
|
have_tempSet = 0; |
120 |
+ |
have_est = 0; |
121 |
+ |
have_target_pressure =0; |
122 |
+ |
have_q_mass = 0; |
123 |
+ |
have_tau_thermostat = 0; |
124 |
+ |
have_tau_barostat = 0; |
125 |
|
} |
126 |
|
|
127 |
|
Globals::~Globals(){ |
656 |
|
} |
657 |
|
break; |
658 |
|
|
659 |
< |
case G_RRF: |
659 |
> |
case G_ECR: |
660 |
|
switch( the_type ){ |
661 |
|
|
662 |
|
case STRING: |
663 |
|
the_event->err_msg = |
664 |
< |
strdup( "Global error. rRF is not a double or int.\n" ); |
664 |
> |
strdup( "Global error. electrostaticCutoffRadius is not a double or int.\n" ); |
665 |
|
return 0; |
666 |
|
break; |
667 |
|
|
668 |
|
case DOUBLE: |
669 |
< |
rRF = the_event->evt.asmt.rhs.dval; |
670 |
< |
have_rrf = 1; |
669 |
> |
ecr = the_event->evt.asmt.rhs.dval; |
670 |
> |
have_ecr = 1; |
671 |
|
return 1; |
672 |
|
break; |
673 |
|
|
674 |
|
case INT: |
675 |
< |
rRF = (double)the_event->evt.asmt.rhs.ival; |
676 |
< |
have_rrf = 1; |
675 |
> |
ecr = (double)the_event->evt.asmt.rhs.ival; |
676 |
> |
have_ecr = 1; |
677 |
|
return 1; |
678 |
|
break; |
679 |
|
|
680 |
|
default: |
681 |
|
the_event->err_msg = |
682 |
< |
strdup( "Global error. rRF unrecognized.\n" ); |
682 |
> |
strdup( "Global error. electrostaticCutoffRadius unrecognized.\n" ); |
683 |
|
return 0; |
684 |
|
break; |
685 |
|
} |
686 |
|
break; |
687 |
+ |
|
688 |
+ |
case G_EST: |
689 |
+ |
switch( the_type ){ |
690 |
+ |
|
691 |
+ |
case STRING: |
692 |
+ |
the_event->err_msg = |
693 |
+ |
strdup( "Global error. electrostaticSkinThickness is not a double or int.\n" ); |
694 |
+ |
return 0; |
695 |
+ |
break; |
696 |
+ |
|
697 |
+ |
case DOUBLE: |
698 |
+ |
est = the_event->evt.asmt.rhs.dval; |
699 |
+ |
have_est = 1; |
700 |
+ |
return 1; |
701 |
+ |
break; |
702 |
+ |
|
703 |
+ |
case INT: |
704 |
+ |
est = (double)the_event->evt.asmt.rhs.ival; |
705 |
+ |
have_est = 1; |
706 |
+ |
return 1; |
707 |
+ |
break; |
708 |
+ |
|
709 |
+ |
default: |
710 |
+ |
the_event->err_msg = |
711 |
+ |
strdup( "Global error. electrostaticSkinThickness unrecognized.\n" ); |
712 |
+ |
return 0; |
713 |
+ |
break; |
714 |
+ |
} |
715 |
+ |
break; |
716 |
|
|
717 |
|
case G_DIELECTRIC: |
718 |
|
switch( the_type ){ |
746 |
|
case G_TEMPSET: |
747 |
|
if( the_type == STRING ){ |
748 |
|
|
749 |
< |
if( !strcmp( "true", the_event->evt.asmt.rhs.sval )) tempSet = 1; |
750 |
< |
else if( !strcmp( "false", the_event->evt.asmt.rhs.sval )) tempSet = 0; |
749 |
> |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) tempSet = 1; |
750 |
> |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) tempSet = 0; |
751 |
|
else{ |
752 |
|
the_event->err_msg = |
753 |
|
strdup( "Global error. tempSet was not \"true\" or \"false\".\n" ); |
765 |
|
case G_USEPBC: |
766 |
|
if( the_type == STRING ){ |
767 |
|
|
768 |
< |
if( !strcmp( "true", the_event->evt.asmt.rhs.sval )) usePBC = 1; |
769 |
< |
else if( !strcmp( "false", the_event->evt.asmt.rhs.sval )) usePBC = 0; |
768 |
> |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) usePBC = 1; |
769 |
> |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) usePBC = 0; |
770 |
|
else{ |
771 |
|
the_event->err_msg = |
772 |
< |
strdup( "Global error. periodicBoundryConditions was not \"true\" or \"false\".\n" ); |
772 |
> |
strdup( "Global error. usePeriodicBoundaryConditions was not \"true\" or \"false\".\n" ); |
773 |
|
return 0; |
774 |
|
} |
775 |
|
return 1; |
776 |
|
} |
777 |
|
|
778 |
|
the_event->err_msg = |
779 |
< |
strdup( "Global error. tempSet was not \"true\" or \"false\".\n" ); |
779 |
> |
strdup( "Global error. usePeriodicBoundaryConditions was not \"true\" or \"false\".\n" ); |
780 |
|
return 0; |
781 |
|
break; |
782 |
+ |
|
783 |
+ |
case G_USERF: |
784 |
+ |
if( the_type == STRING ){ |
785 |
+ |
|
786 |
+ |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useRF = 1; |
787 |
+ |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useRF = 0; |
788 |
+ |
else{ |
789 |
+ |
the_event->err_msg = |
790 |
+ |
strdup( "Global error. useReactionField was not \"true\" or \"false\".\n" ); |
791 |
+ |
return 0; |
792 |
+ |
} |
793 |
+ |
return 1; |
794 |
+ |
} |
795 |
+ |
|
796 |
+ |
the_event->err_msg = |
797 |
+ |
strdup( "Global error. useReactionField was not \"true\" or \"false\".\n" ); |
798 |
+ |
return 0; |
799 |
+ |
break; |
800 |
+ |
|
801 |
+ |
case G_TARGETPRESSURE: |
802 |
+ |
switch( the_type ){ |
803 |
+ |
|
804 |
+ |
case STRING: |
805 |
+ |
the_event->err_msg = |
806 |
+ |
strdup( "Global error. targetPressure is not a double or int.\n" ); |
807 |
+ |
return 0; |
808 |
+ |
break; |
809 |
+ |
|
810 |
+ |
case DOUBLE: |
811 |
+ |
target_pressure = the_event->evt.asmt.rhs.dval; |
812 |
+ |
have_target_pressure = 1; |
813 |
+ |
return 1; |
814 |
+ |
break; |
815 |
+ |
|
816 |
+ |
case INT: |
817 |
+ |
target_pressure = (double)the_event->evt.asmt.rhs.ival; |
818 |
+ |
have_target_pressure = 1; |
819 |
+ |
return 1; |
820 |
+ |
break; |
821 |
+ |
|
822 |
+ |
default: |
823 |
+ |
the_event->err_msg = |
824 |
+ |
strdup( "Global error. targetPressure unrecognized.\n" ); |
825 |
+ |
return 0; |
826 |
+ |
break; |
827 |
+ |
} |
828 |
+ |
break; |
829 |
+ |
|
830 |
+ |
case G_QMASS: |
831 |
+ |
switch( the_type ){ |
832 |
+ |
|
833 |
+ |
case STRING: |
834 |
+ |
the_event->err_msg = |
835 |
+ |
strdup( "Global error. qMass is not a double or int.\n" ); |
836 |
+ |
return 0; |
837 |
+ |
break; |
838 |
+ |
|
839 |
+ |
case DOUBLE: |
840 |
+ |
q_mass = the_event->evt.asmt.rhs.dval; |
841 |
+ |
have_q_mass = 1; |
842 |
+ |
return 1; |
843 |
+ |
break; |
844 |
+ |
|
845 |
+ |
case INT: |
846 |
+ |
q_mass = (double)the_event->evt.asmt.rhs.ival; |
847 |
+ |
have_q_mass = 1; |
848 |
+ |
return 1; |
849 |
+ |
break; |
850 |
+ |
|
851 |
+ |
default: |
852 |
+ |
the_event->err_msg = |
853 |
+ |
strdup( "Global error. qMass unrecognized.\n" ); |
854 |
+ |
return 0; |
855 |
+ |
break; |
856 |
+ |
} |
857 |
+ |
break; |
858 |
+ |
|
859 |
+ |
case G_TAUTHERMOSTAT: |
860 |
+ |
switch( the_type ){ |
861 |
+ |
|
862 |
+ |
case STRING: |
863 |
+ |
the_event->err_msg = |
864 |
+ |
strdup( "Global error. tauThermostat is not a double or int.\n" ); |
865 |
+ |
return 0; |
866 |
+ |
break; |
867 |
+ |
|
868 |
+ |
case DOUBLE: |
869 |
+ |
tau_thermostat = the_event->evt.asmt.rhs.dval; |
870 |
+ |
have_tau_thermostat = 1; |
871 |
+ |
return 1; |
872 |
+ |
break; |
873 |
+ |
|
874 |
+ |
case INT: |
875 |
+ |
tau_thermostat = (double)the_event->evt.asmt.rhs.ival; |
876 |
+ |
have_tau_thermostat = 1; |
877 |
+ |
return 1; |
878 |
+ |
break; |
879 |
+ |
|
880 |
+ |
default: |
881 |
+ |
the_event->err_msg = |
882 |
+ |
strdup( "Global error. tauThermostat unrecognized.\n" ); |
883 |
+ |
return 0; |
884 |
+ |
break; |
885 |
+ |
} |
886 |
+ |
break; |
887 |
+ |
|
888 |
+ |
case G_TAUBAROSTAT: |
889 |
+ |
switch( the_type ){ |
890 |
+ |
|
891 |
+ |
case STRING: |
892 |
+ |
the_event->err_msg = |
893 |
+ |
strdup( "Global error. tauBarostat is not a double or int.\n" ); |
894 |
+ |
return 0; |
895 |
+ |
break; |
896 |
+ |
|
897 |
+ |
case DOUBLE: |
898 |
+ |
tau_barostat = the_event->evt.asmt.rhs.dval; |
899 |
+ |
have_tau_barostat = 1; |
900 |
+ |
return 1; |
901 |
+ |
break; |
902 |
+ |
|
903 |
+ |
case INT: |
904 |
+ |
tau_barostat = (double)the_event->evt.asmt.rhs.ival; |
905 |
+ |
have_tau_barostat = 1; |
906 |
+ |
return 1; |
907 |
+ |
break; |
908 |
+ |
|
909 |
+ |
default: |
910 |
+ |
the_event->err_msg = |
911 |
+ |
strdup( "Global error. tauBarostat unrecognized.\n" ); |
912 |
+ |
return 0; |
913 |
+ |
break; |
914 |
+ |
} |
915 |
+ |
break; |
916 |
+ |
|
917 |
|
} |
918 |
|
} |
919 |
|
|