| 25 |
|
#define G_RUNTIME 6 |
| 26 |
|
|
| 27 |
|
//optional parameters |
| 28 |
< |
#define G_INITIALCONFIG 7 |
| 29 |
< |
#define G_FINALCONFIG 8 |
| 30 |
< |
#define G_NMOL 9 |
| 31 |
< |
#define G_DENSITY 10 |
| 32 |
< |
#define G_BOX 11 |
| 33 |
< |
#define G_BOXX 12 |
| 34 |
< |
#define G_BOXY 13 |
| 35 |
< |
#define G_BOXZ 14 |
| 36 |
< |
#define G_SAMPLETIME 15 |
| 37 |
< |
#define G_STATUSTIME 16 |
| 38 |
< |
#define G_RRF 17 |
| 39 |
< |
#define G_DIELECTRIC 18 |
| 40 |
< |
#define G_TEMPSET 19 |
| 41 |
< |
#define G_THERMALTIME 20 |
| 42 |
< |
#define G_USEPBC 21 |
| 43 |
< |
#define G_MIXINGRULE 22 |
| 28 |
> |
#define G_INITIALCONFIG 7 |
| 29 |
> |
#define G_FINALCONFIG 8 |
| 30 |
> |
#define G_NMOL 9 |
| 31 |
> |
#define G_DENSITY 10 |
| 32 |
> |
#define G_BOX 11 |
| 33 |
> |
#define G_BOXX 12 |
| 34 |
> |
#define G_BOXY 13 |
| 35 |
> |
#define G_BOXZ 14 |
| 36 |
> |
#define G_SAMPLETIME 15 |
| 37 |
> |
#define G_STATUSTIME 16 |
| 38 |
> |
#define G_ECR 17 |
| 39 |
> |
#define G_DIELECTRIC 18 |
| 40 |
> |
#define G_TEMPSET 19 |
| 41 |
> |
#define G_THERMALTIME 20 |
| 42 |
> |
#define G_USEPBC 21 |
| 43 |
> |
#define G_MIXINGRULE 22 |
| 44 |
> |
#define G_EST 23 |
| 45 |
> |
#define G_USERF 24 |
| 46 |
> |
#define G_TARGETPRESSURE 25 |
| 47 |
> |
#define G_QMASS 26 |
| 48 |
> |
#define G_TAUTHERMOSTAT 27 |
| 49 |
> |
#define G_TAUBAROSTAT 28 |
| 50 |
|
|
| 51 |
|
|
| 52 |
|
Globals::Globals(){ |
| 76 |
|
addHash( "boxZ", G_BOXZ ); |
| 77 |
|
addHash( "sampleTime", G_SAMPLETIME ); |
| 78 |
|
addHash( "statusTime", G_STATUSTIME ); |
| 79 |
< |
addHash( "rRF", G_RRF ); |
| 79 |
> |
addHash( "electrostaticCutoffRadius", G_ECR ); |
| 80 |
|
addHash( "dielectric", G_DIELECTRIC ); |
| 81 |
|
addHash( "tempSet", G_TEMPSET ); |
| 82 |
|
addHash( "thermalTime", G_THERMALTIME ); |
| 83 |
|
addHash( "mixingRule", G_MIXINGRULE); |
| 84 |
< |
addHash( "periodicBox", G_USEPBC); |
| 84 |
> |
addHash( "usePeriodicBoundaryConditions", G_USEPBC); |
| 85 |
> |
addHash( "electrostaticSkinThickness", G_EST ); |
| 86 |
> |
addHash( "useReactionField", G_USERF ); |
| 87 |
> |
addHash( "targetPressure", G_TARGETPRESSURE); |
| 88 |
> |
addHash( "qMass", G_QMASS); |
| 89 |
> |
addHash( "tauThermostat", G_TAUTHERMOSTAT); |
| 90 |
> |
addHash( "tauBarostat", G_TAUBAROSTAT); |
| 91 |
|
|
| 92 |
|
// define some default values |
| 93 |
|
|
| 94 |
|
strcpy( mixingRule,"standard"); //default mixing rules to standard. |
| 95 |
|
usePBC = 1; //default periodic boundry conditions to on |
| 96 |
+ |
useRF = 0; |
| 97 |
|
|
| 85 |
– |
|
| 98 |
|
have_force_field = 0; |
| 99 |
|
have_n_components = 0; |
| 100 |
|
have_target_temp = 0; |
| 114 |
|
have_sample_time = 0; |
| 115 |
|
have_status_time = 0; |
| 116 |
|
have_thermal_time = 0; |
| 117 |
< |
have_rrf = 0; |
| 117 |
> |
have_ecr = 0; |
| 118 |
|
have_dielectric = 0; |
| 119 |
|
have_tempSet = 0; |
| 120 |
+ |
have_est = 0; |
| 121 |
+ |
have_target_pressure =0; |
| 122 |
+ |
have_q_mass = 0; |
| 123 |
+ |
have_tau_thermostat = 0; |
| 124 |
+ |
have_tau_barostat = 0; |
| 125 |
|
} |
| 126 |
|
|
| 127 |
|
Globals::~Globals(){ |
| 656 |
|
} |
| 657 |
|
break; |
| 658 |
|
|
| 659 |
< |
case G_RRF: |
| 659 |
> |
case G_ECR: |
| 660 |
|
switch( the_type ){ |
| 661 |
|
|
| 662 |
|
case STRING: |
| 663 |
|
the_event->err_msg = |
| 664 |
< |
strdup( "Global error. rRF is not a double or int.\n" ); |
| 664 |
> |
strdup( "Global error. electrostaticCutoffRadius is not a double or int.\n" ); |
| 665 |
|
return 0; |
| 666 |
|
break; |
| 667 |
|
|
| 668 |
|
case DOUBLE: |
| 669 |
< |
rRF = the_event->evt.asmt.rhs.dval; |
| 670 |
< |
have_rrf = 1; |
| 669 |
> |
ecr = the_event->evt.asmt.rhs.dval; |
| 670 |
> |
have_ecr = 1; |
| 671 |
|
return 1; |
| 672 |
|
break; |
| 673 |
|
|
| 674 |
|
case INT: |
| 675 |
< |
rRF = (double)the_event->evt.asmt.rhs.ival; |
| 676 |
< |
have_rrf = 1; |
| 675 |
> |
ecr = (double)the_event->evt.asmt.rhs.ival; |
| 676 |
> |
have_ecr = 1; |
| 677 |
|
return 1; |
| 678 |
|
break; |
| 679 |
|
|
| 680 |
|
default: |
| 681 |
|
the_event->err_msg = |
| 682 |
< |
strdup( "Global error. rRF unrecognized.\n" ); |
| 682 |
> |
strdup( "Global error. electrostaticCutoffRadius unrecognized.\n" ); |
| 683 |
|
return 0; |
| 684 |
|
break; |
| 685 |
|
} |
| 686 |
|
break; |
| 687 |
+ |
|
| 688 |
+ |
case G_EST: |
| 689 |
+ |
switch( the_type ){ |
| 690 |
+ |
|
| 691 |
+ |
case STRING: |
| 692 |
+ |
the_event->err_msg = |
| 693 |
+ |
strdup( "Global error. electrostaticSkinThickness is not a double or int.\n" ); |
| 694 |
+ |
return 0; |
| 695 |
+ |
break; |
| 696 |
+ |
|
| 697 |
+ |
case DOUBLE: |
| 698 |
+ |
est = the_event->evt.asmt.rhs.dval; |
| 699 |
+ |
have_est = 1; |
| 700 |
+ |
return 1; |
| 701 |
+ |
break; |
| 702 |
+ |
|
| 703 |
+ |
case INT: |
| 704 |
+ |
est = (double)the_event->evt.asmt.rhs.ival; |
| 705 |
+ |
have_est = 1; |
| 706 |
+ |
return 1; |
| 707 |
+ |
break; |
| 708 |
+ |
|
| 709 |
+ |
default: |
| 710 |
+ |
the_event->err_msg = |
| 711 |
+ |
strdup( "Global error. electrostaticSkinThickness unrecognized.\n" ); |
| 712 |
+ |
return 0; |
| 713 |
+ |
break; |
| 714 |
+ |
} |
| 715 |
+ |
break; |
| 716 |
|
|
| 717 |
|
case G_DIELECTRIC: |
| 718 |
|
switch( the_type ){ |
| 746 |
|
case G_TEMPSET: |
| 747 |
|
if( the_type == STRING ){ |
| 748 |
|
|
| 749 |
< |
if( !strcmp( "true", the_event->evt.asmt.rhs.sval )) tempSet = 1; |
| 750 |
< |
else if( !strcmp( "false", the_event->evt.asmt.rhs.sval )) tempSet = 0; |
| 749 |
> |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) tempSet = 1; |
| 750 |
> |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) tempSet = 0; |
| 751 |
|
else{ |
| 752 |
|
the_event->err_msg = |
| 753 |
|
strdup( "Global error. tempSet was not \"true\" or \"false\".\n" ); |
| 765 |
|
case G_USEPBC: |
| 766 |
|
if( the_type == STRING ){ |
| 767 |
|
|
| 768 |
< |
if( !strcmp( "true", the_event->evt.asmt.rhs.sval )) usePBC = 1; |
| 769 |
< |
else if( !strcmp( "false", the_event->evt.asmt.rhs.sval )) usePBC = 0; |
| 768 |
> |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) usePBC = 1; |
| 769 |
> |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) usePBC = 0; |
| 770 |
|
else{ |
| 771 |
|
the_event->err_msg = |
| 772 |
< |
strdup( "Global error. periodicBoundryConditions was not \"true\" or \"false\".\n" ); |
| 772 |
> |
strdup( "Global error. usePeriodicBoundaryConditions was not \"true\" or \"false\".\n" ); |
| 773 |
|
return 0; |
| 774 |
|
} |
| 775 |
|
return 1; |
| 776 |
|
} |
| 777 |
|
|
| 778 |
|
the_event->err_msg = |
| 779 |
< |
strdup( "Global error. tempSet was not \"true\" or \"false\".\n" ); |
| 779 |
> |
strdup( "Global error. usePeriodicBoundaryConditions was not \"true\" or \"false\".\n" ); |
| 780 |
|
return 0; |
| 781 |
|
break; |
| 782 |
+ |
|
| 783 |
+ |
case G_USERF: |
| 784 |
+ |
if( the_type == STRING ){ |
| 785 |
+ |
|
| 786 |
+ |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useRF = 1; |
| 787 |
+ |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useRF = 0; |
| 788 |
+ |
else{ |
| 789 |
+ |
the_event->err_msg = |
| 790 |
+ |
strdup( "Global error. useReactionField was not \"true\" or \"false\".\n" ); |
| 791 |
+ |
return 0; |
| 792 |
+ |
} |
| 793 |
+ |
return 1; |
| 794 |
+ |
} |
| 795 |
+ |
|
| 796 |
+ |
the_event->err_msg = |
| 797 |
+ |
strdup( "Global error. useReactionField was not \"true\" or \"false\".\n" ); |
| 798 |
+ |
return 0; |
| 799 |
+ |
break; |
| 800 |
+ |
|
| 801 |
+ |
case G_TARGETPRESSURE: |
| 802 |
+ |
switch( the_type ){ |
| 803 |
+ |
|
| 804 |
+ |
case STRING: |
| 805 |
+ |
the_event->err_msg = |
| 806 |
+ |
strdup( "Global error. targetPressure is not a double or int.\n" ); |
| 807 |
+ |
return 0; |
| 808 |
+ |
break; |
| 809 |
+ |
|
| 810 |
+ |
case DOUBLE: |
| 811 |
+ |
target_pressure = the_event->evt.asmt.rhs.dval; |
| 812 |
+ |
have_target_pressure = 1; |
| 813 |
+ |
return 1; |
| 814 |
+ |
break; |
| 815 |
+ |
|
| 816 |
+ |
case INT: |
| 817 |
+ |
target_pressure = (double)the_event->evt.asmt.rhs.ival; |
| 818 |
+ |
have_target_pressure = 1; |
| 819 |
+ |
return 1; |
| 820 |
+ |
break; |
| 821 |
+ |
|
| 822 |
+ |
default: |
| 823 |
+ |
the_event->err_msg = |
| 824 |
+ |
strdup( "Global error. targetPressure unrecognized.\n" ); |
| 825 |
+ |
return 0; |
| 826 |
+ |
break; |
| 827 |
+ |
} |
| 828 |
+ |
break; |
| 829 |
+ |
|
| 830 |
+ |
case G_QMASS: |
| 831 |
+ |
switch( the_type ){ |
| 832 |
+ |
|
| 833 |
+ |
case STRING: |
| 834 |
+ |
the_event->err_msg = |
| 835 |
+ |
strdup( "Global error. qMass is not a double or int.\n" ); |
| 836 |
+ |
return 0; |
| 837 |
+ |
break; |
| 838 |
+ |
|
| 839 |
+ |
case DOUBLE: |
| 840 |
+ |
q_mass = the_event->evt.asmt.rhs.dval; |
| 841 |
+ |
have_q_mass = 1; |
| 842 |
+ |
return 1; |
| 843 |
+ |
break; |
| 844 |
+ |
|
| 845 |
+ |
case INT: |
| 846 |
+ |
q_mass = (double)the_event->evt.asmt.rhs.ival; |
| 847 |
+ |
have_q_mass = 1; |
| 848 |
+ |
return 1; |
| 849 |
+ |
break; |
| 850 |
+ |
|
| 851 |
+ |
default: |
| 852 |
+ |
the_event->err_msg = |
| 853 |
+ |
strdup( "Global error. qMass unrecognized.\n" ); |
| 854 |
+ |
return 0; |
| 855 |
+ |
break; |
| 856 |
+ |
} |
| 857 |
+ |
break; |
| 858 |
+ |
|
| 859 |
+ |
case G_TAUTHERMOSTAT: |
| 860 |
+ |
switch( the_type ){ |
| 861 |
+ |
|
| 862 |
+ |
case STRING: |
| 863 |
+ |
the_event->err_msg = |
| 864 |
+ |
strdup( "Global error. tauThermostat is not a double or int.\n" ); |
| 865 |
+ |
return 0; |
| 866 |
+ |
break; |
| 867 |
+ |
|
| 868 |
+ |
case DOUBLE: |
| 869 |
+ |
tau_thermostat = the_event->evt.asmt.rhs.dval; |
| 870 |
+ |
have_tau_thermostat = 1; |
| 871 |
+ |
return 1; |
| 872 |
+ |
break; |
| 873 |
+ |
|
| 874 |
+ |
case INT: |
| 875 |
+ |
tau_thermostat = (double)the_event->evt.asmt.rhs.ival; |
| 876 |
+ |
have_tau_thermostat = 1; |
| 877 |
+ |
return 1; |
| 878 |
+ |
break; |
| 879 |
+ |
|
| 880 |
+ |
default: |
| 881 |
+ |
the_event->err_msg = |
| 882 |
+ |
strdup( "Global error. tauThermostat unrecognized.\n" ); |
| 883 |
+ |
return 0; |
| 884 |
+ |
break; |
| 885 |
+ |
} |
| 886 |
+ |
break; |
| 887 |
+ |
|
| 888 |
+ |
case G_TAUBAROSTAT: |
| 889 |
+ |
switch( the_type ){ |
| 890 |
+ |
|
| 891 |
+ |
case STRING: |
| 892 |
+ |
the_event->err_msg = |
| 893 |
+ |
strdup( "Global error. tauBarostat is not a double or int.\n" ); |
| 894 |
+ |
return 0; |
| 895 |
+ |
break; |
| 896 |
+ |
|
| 897 |
+ |
case DOUBLE: |
| 898 |
+ |
tau_barostat = the_event->evt.asmt.rhs.dval; |
| 899 |
+ |
have_tau_barostat = 1; |
| 900 |
+ |
return 1; |
| 901 |
+ |
break; |
| 902 |
+ |
|
| 903 |
+ |
case INT: |
| 904 |
+ |
tau_barostat = (double)the_event->evt.asmt.rhs.ival; |
| 905 |
+ |
have_tau_barostat = 1; |
| 906 |
+ |
return 1; |
| 907 |
+ |
break; |
| 908 |
+ |
|
| 909 |
+ |
default: |
| 910 |
+ |
the_event->err_msg = |
| 911 |
+ |
strdup( "Global error. tauBarostat unrecognized.\n" ); |
| 912 |
+ |
return 0; |
| 913 |
+ |
break; |
| 914 |
+ |
} |
| 915 |
+ |
break; |
| 916 |
+ |
|
| 917 |
|
} |
| 918 |
|
} |
| 919 |
|
|