| 67 |
|
#define G_ZCONSGAP 46 |
| 68 |
|
#define G_ZCONSFIXTIME 47 |
| 69 |
|
#define G_ZCONSUSINGSMD 48 |
| 70 |
+ |
#define G_USEMOLECULARCUTOFFS 49 |
| 71 |
|
|
| 72 |
|
Globals::Globals(){ |
| 73 |
|
|
| 130 |
|
addHash( "minLSMaxIter", G_MIN_LSMAXITER); |
| 131 |
|
addHash( "zconsGap", G_ZCONSGAP); |
| 132 |
|
addHash( "zconsFixtime", G_ZCONSFIXTIME); |
| 133 |
< |
addHash( "zconsUsingSMD", G_ZCONSUSINGSMD); |
| 133 |
> |
addHash( "zconsUsingSMD", G_ZCONSUSINGSMD); |
| 134 |
> |
addHash( "useMolecularCutoffs", G_USEMOLECULARCUTOFFS); |
| 135 |
|
|
| 136 |
|
strcpy( mixingRule,"standard"); //default mixing rules to standard. |
| 137 |
|
usePBC = 1; //default periodic boundry conditions to on |
| 138 |
|
useRF = 0; |
| 139 |
+ |
useMolecularCutoffs = 0; |
| 140 |
|
useInitTime = 0; // default to pull init time from the init file |
| 141 |
|
useInitXSstate = 0; // default to pull the extended state from the init file |
| 142 |
|
orthoBoxTolerance = 1E-6; |
| 186 |
|
have_minimizer_gtol = 0; |
| 187 |
|
have_minimizer_ls_tol = 0; |
| 188 |
|
have_minimizer_ls_maxiteration = 0; |
| 189 |
< |
|
| 189 |
> |
have_use_molecular_cutoffs = 0; |
| 190 |
|
|
| 191 |
|
} |
| 192 |
|
|
| 1074 |
|
return 0; |
| 1075 |
|
break; |
| 1076 |
|
|
| 1077 |
+ |
case G_USEMOLECULARCUTOFFS: |
| 1078 |
+ |
if( the_type == STRING ){ |
| 1079 |
+ |
|
| 1080 |
+ |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useMolecularCutoffs = 1; |
| 1081 |
+ |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useMolecularCutoffs = 0; |
| 1082 |
+ |
else{ |
| 1083 |
+ |
the_event->err_msg = |
| 1084 |
+ |
strdup( "Global error. useMolecularCutoffs was not \"true\" or \"false\".\n" ); |
| 1085 |
+ |
return 0; |
| 1086 |
+ |
} |
| 1087 |
+ |
return 1; |
| 1088 |
+ |
} |
| 1089 |
+ |
|
| 1090 |
+ |
the_event->err_msg = |
| 1091 |
+ |
strdup( "Global error. useMolecularCutoffs was not \"true\" or \"false\".\n" ); |
| 1092 |
+ |
return 0; |
| 1093 |
+ |
break; |
| 1094 |
+ |
|
| 1095 |
|
case G_TARGETPRESSURE: |
| 1096 |
|
switch( the_type ){ |
| 1097 |
|
|