| 25 |
|
#define G_RUNTIME 6 |
| 26 |
|
|
| 27 |
|
//optional parameters |
| 28 |
< |
#define G_INITIALCONFIG 7 |
| 29 |
< |
#define G_FINALCONFIG 8 |
| 30 |
< |
#define G_NMOL 9 |
| 31 |
< |
#define G_DENSITY 10 |
| 32 |
< |
#define G_BOX 11 |
| 33 |
< |
#define G_BOXX 12 |
| 34 |
< |
#define G_BOXY 13 |
| 35 |
< |
#define G_BOXZ 14 |
| 36 |
< |
#define G_SAMPLETIME 15 |
| 37 |
< |
#define G_STATUSTIME 16 |
| 38 |
< |
#define G_ECR 17 |
| 39 |
< |
#define G_DIELECTRIC 18 |
| 40 |
< |
#define G_TEMPSET 19 |
| 41 |
< |
#define G_THERMALTIME 20 |
| 42 |
< |
#define G_USEPBC 21 |
| 43 |
< |
#define G_MIXINGRULE 22 |
| 44 |
< |
#define G_EST 23 |
| 45 |
< |
#define G_USERF 24 |
| 28 |
> |
#define G_INITIALCONFIG 7 |
| 29 |
> |
#define G_FINALCONFIG 8 |
| 30 |
> |
#define G_NMOL 9 |
| 31 |
> |
#define G_DENSITY 10 |
| 32 |
> |
#define G_BOX 11 |
| 33 |
> |
#define G_BOXX 12 |
| 34 |
> |
#define G_BOXY 13 |
| 35 |
> |
#define G_BOXZ 14 |
| 36 |
> |
#define G_SAMPLETIME 15 |
| 37 |
> |
#define G_STATUSTIME 16 |
| 38 |
> |
#define G_ECR 17 |
| 39 |
> |
#define G_DIELECTRIC 18 |
| 40 |
> |
#define G_TEMPSET 19 |
| 41 |
> |
#define G_THERMALTIME 20 |
| 42 |
> |
#define G_USEPBC 21 |
| 43 |
> |
#define G_MIXINGRULE 22 |
| 44 |
> |
#define G_EST 23 |
| 45 |
> |
#define G_USERF 24 |
| 46 |
> |
#define G_TARGETPRESSURE 25 |
| 47 |
> |
#define G_TAUTHERMOSTAT 26 |
| 48 |
> |
#define G_TAUBAROSTAT 27 |
| 49 |
> |
#define G_ZCONSTIME 28 |
| 50 |
> |
#define G_NZCONSTRAINTS 29 |
| 51 |
|
|
| 52 |
|
|
| 53 |
|
Globals::Globals(){ |
| 85 |
|
addHash( "usePeriodicBoundaryConditions", G_USEPBC); |
| 86 |
|
addHash( "electrostaticSkinThickness", G_EST ); |
| 87 |
|
addHash( "useReactionField", G_USERF ); |
| 88 |
< |
|
| 88 |
> |
addHash( "targetPressure", G_TARGETPRESSURE); |
| 89 |
> |
addHash( "tauThermostat", G_TAUTHERMOSTAT); |
| 90 |
> |
addHash( "tauBarostat", G_TAUBAROSTAT); |
| 91 |
> |
addHash( "zconsTime", G_ZCONSTIME); |
| 92 |
> |
addHash( "nZconstraints", G_NZCONSTRAINTS); |
| 93 |
> |
|
| 94 |
|
// define some default values |
| 95 |
|
|
| 96 |
|
strcpy( mixingRule,"standard"); //default mixing rules to standard. |
| 120 |
|
have_dielectric = 0; |
| 121 |
|
have_tempSet = 0; |
| 122 |
|
have_est = 0; |
| 123 |
+ |
have_target_pressure =0; |
| 124 |
+ |
have_q_mass = 0; |
| 125 |
+ |
have_tau_thermostat = 0; |
| 126 |
+ |
have_tau_barostat = 0; |
| 127 |
+ |
have_zcon_time = 0; |
| 128 |
+ |
have_n_zConstraints = 0; |
| 129 |
+ |
have_zConstraints = 0; |
| 130 |
|
} |
| 131 |
|
|
| 132 |
|
Globals::~Globals(){ |
| 201 |
|
return 0; |
| 202 |
|
} |
| 203 |
|
|
| 204 |
< |
int Globals::componentStartIndex( event* the_event ){ |
| 204 |
> |
int Globals::componentEnd( event* the_event ){ |
| 205 |
|
|
| 206 |
< |
current_component->startIndex( the_event->evt.si.array, |
| 207 |
< |
the_event->evt.si.n_elements ); |
| 206 |
> |
the_event->err_msg = current_component->checkMe(); |
| 207 |
> |
if( the_event->err_msg != NULL ) return 0; |
| 208 |
> |
|
| 209 |
|
return 1; |
| 210 |
|
} |
| 211 |
|
|
| 212 |
< |
int Globals::componentEnd( event* the_event ){ |
| 212 |
> |
int Globals::newZconstraint( event* the_event ){ |
| 213 |
> |
|
| 214 |
|
|
| 215 |
< |
the_event->err_msg = current_component->checkMe(); |
| 215 |
> |
int index = the_event->evt.blk_index; |
| 216 |
> |
char err[200]; |
| 217 |
> |
current_zConstraint = new ZconStamp( index ); |
| 218 |
> |
|
| 219 |
> |
have_zConstraints = 1; |
| 220 |
> |
|
| 221 |
> |
if( have_n_zConstraints && index < n_zConstraints ) |
| 222 |
> |
zConstraints[index] = current_zConstraint; |
| 223 |
> |
else{ |
| 224 |
> |
if( have_n_zConstraints ){ |
| 225 |
> |
sprintf( err, "Globals error, %d out of nZconstraints range", |
| 226 |
> |
index ); |
| 227 |
> |
the_event->err_msg = strdup( err ); |
| 228 |
> |
return 0; |
| 229 |
> |
} |
| 230 |
> |
else{ |
| 231 |
> |
the_event->err_msg = strdup("Globals error, nZconstraints" |
| 232 |
> |
" not given before" |
| 233 |
> |
" first zConstraint declaration." ); |
| 234 |
> |
return 0; |
| 235 |
> |
} |
| 236 |
> |
} |
| 237 |
> |
|
| 238 |
> |
return 1; |
| 239 |
> |
} |
| 240 |
> |
|
| 241 |
> |
|
| 242 |
> |
|
| 243 |
> |
int Globals::zConstraintAssign( event* the_event ){ |
| 244 |
> |
|
| 245 |
> |
switch( the_event->evt.asmt.asmt_type ){ |
| 246 |
> |
|
| 247 |
> |
case STRING: |
| 248 |
> |
return current_zConstraint->assignString( the_event->evt.asmt.lhs, |
| 249 |
> |
the_event->evt.asmt.rhs.sval, |
| 250 |
> |
&(the_event->err_msg)); |
| 251 |
> |
break; |
| 252 |
> |
|
| 253 |
> |
case DOUBLE: |
| 254 |
> |
return current_zConstraint->assignDouble( the_event->evt.asmt.lhs, |
| 255 |
> |
the_event->evt.asmt.rhs.dval, |
| 256 |
> |
&(the_event->err_msg)); |
| 257 |
> |
break; |
| 258 |
> |
|
| 259 |
> |
case INT: |
| 260 |
> |
return current_zConstraint->assignInt( the_event->evt.asmt.lhs, |
| 261 |
> |
the_event->evt.asmt.rhs.ival, |
| 262 |
> |
&(the_event->err_msg)); |
| 263 |
> |
break; |
| 264 |
> |
|
| 265 |
> |
default: |
| 266 |
> |
the_event->err_msg = strdup( "Globals error. Invalid zConstraint" |
| 267 |
> |
" assignment type" ); |
| 268 |
> |
return 0; |
| 269 |
> |
break; |
| 270 |
> |
} |
| 271 |
> |
return 0; |
| 272 |
> |
} |
| 273 |
> |
|
| 274 |
> |
int Globals::zConstraintEnd( event* the_event ){ |
| 275 |
> |
|
| 276 |
> |
the_event->err_msg = current_zConstraint->checkMe(); |
| 277 |
|
if( the_event->err_msg != NULL ) return 0; |
| 278 |
|
|
| 279 |
|
return 1; |
| 328 |
|
return 1; |
| 329 |
|
} |
| 330 |
|
break; |
| 331 |
+ |
|
| 332 |
+ |
case G_NZCONSTRAINTS: |
| 333 |
+ |
if( the_type == STRING ){ |
| 334 |
+ |
the_event->err_msg = |
| 335 |
+ |
strdup("Global error. nZconstraints is not a double or an int.\n" ); |
| 336 |
+ |
return 0; |
| 337 |
+ |
} |
| 338 |
|
|
| 339 |
+ |
else if( the_type == DOUBLE ){ |
| 340 |
+ |
n_zConstraints = (int)the_event->evt.asmt.rhs.dval; |
| 341 |
+ |
zConstraints = new ZconStamp*[n_zConstraints]; |
| 342 |
+ |
have_n_zConstraints = 1; |
| 343 |
+ |
return 1; |
| 344 |
+ |
} |
| 345 |
+ |
|
| 346 |
+ |
else{ |
| 347 |
+ |
n_zConstraints = the_event->evt.asmt.rhs.ival; |
| 348 |
+ |
zConstraints = new ZconStamp*[n_zConstraints]; |
| 349 |
+ |
have_n_zConstraints = 1; |
| 350 |
+ |
return 1; |
| 351 |
+ |
} |
| 352 |
+ |
break; |
| 353 |
+ |
|
| 354 |
|
case G_TARGETTEMP: |
| 355 |
|
switch( the_type ){ |
| 356 |
|
|
| 836 |
|
case G_TEMPSET: |
| 837 |
|
if( the_type == STRING ){ |
| 838 |
|
|
| 839 |
< |
if( !strcmp( "true", the_event->evt.asmt.rhs.sval )) tempSet = 1; |
| 840 |
< |
else if( !strcmp( "false", the_event->evt.asmt.rhs.sval )) tempSet = 0; |
| 839 |
> |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) tempSet = 1; |
| 840 |
> |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) tempSet = 0; |
| 841 |
|
else{ |
| 842 |
|
the_event->err_msg = |
| 843 |
|
strdup( "Global error. tempSet was not \"true\" or \"false\".\n" ); |
| 855 |
|
case G_USEPBC: |
| 856 |
|
if( the_type == STRING ){ |
| 857 |
|
|
| 858 |
< |
if( !strcmp( "true", the_event->evt.asmt.rhs.sval )) usePBC = 1; |
| 859 |
< |
else if( !strcmp( "false", the_event->evt.asmt.rhs.sval )) usePBC = 0; |
| 858 |
> |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) usePBC = 1; |
| 859 |
> |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) usePBC = 0; |
| 860 |
|
else{ |
| 861 |
|
the_event->err_msg = |
| 862 |
|
strdup( "Global error. usePeriodicBoundaryConditions was not \"true\" or \"false\".\n" ); |
| 873 |
|
case G_USERF: |
| 874 |
|
if( the_type == STRING ){ |
| 875 |
|
|
| 876 |
< |
if( !strcmp( "true", the_event->evt.asmt.rhs.sval )) useRF = 1; |
| 877 |
< |
else if( !strcmp( "false", the_event->evt.asmt.rhs.sval )) useRF = 0; |
| 876 |
> |
if( !strcasecmp( "true", the_event->evt.asmt.rhs.sval )) useRF = 1; |
| 877 |
> |
else if( !strcasecmp( "false", the_event->evt.asmt.rhs.sval )) useRF = 0; |
| 878 |
|
else{ |
| 879 |
|
the_event->err_msg = |
| 880 |
|
strdup( "Global error. useReactionField was not \"true\" or \"false\".\n" ); |
| 888 |
|
return 0; |
| 889 |
|
break; |
| 890 |
|
|
| 891 |
+ |
case G_TARGETPRESSURE: |
| 892 |
+ |
switch( the_type ){ |
| 893 |
+ |
|
| 894 |
+ |
case STRING: |
| 895 |
+ |
the_event->err_msg = |
| 896 |
+ |
strdup( "Global error. targetPressure is not a double or int.\n" ); |
| 897 |
+ |
return 0; |
| 898 |
+ |
break; |
| 899 |
+ |
|
| 900 |
+ |
case DOUBLE: |
| 901 |
+ |
target_pressure = the_event->evt.asmt.rhs.dval; |
| 902 |
+ |
have_target_pressure = 1; |
| 903 |
+ |
return 1; |
| 904 |
+ |
break; |
| 905 |
+ |
|
| 906 |
+ |
case INT: |
| 907 |
+ |
target_pressure = (double)the_event->evt.asmt.rhs.ival; |
| 908 |
+ |
have_target_pressure = 1; |
| 909 |
+ |
return 1; |
| 910 |
+ |
break; |
| 911 |
+ |
|
| 912 |
+ |
default: |
| 913 |
+ |
the_event->err_msg = |
| 914 |
+ |
strdup( "Global error. targetPressure unrecognized.\n" ); |
| 915 |
+ |
return 0; |
| 916 |
+ |
break; |
| 917 |
+ |
} |
| 918 |
+ |
break; |
| 919 |
|
|
| 920 |
+ |
case G_TAUTHERMOSTAT: |
| 921 |
+ |
switch( the_type ){ |
| 922 |
+ |
|
| 923 |
+ |
case STRING: |
| 924 |
+ |
the_event->err_msg = |
| 925 |
+ |
strdup( "Global error. tauThermostat is not a double or int.\n" ); |
| 926 |
+ |
return 0; |
| 927 |
+ |
break; |
| 928 |
+ |
|
| 929 |
+ |
case DOUBLE: |
| 930 |
+ |
tau_thermostat = the_event->evt.asmt.rhs.dval; |
| 931 |
+ |
have_tau_thermostat = 1; |
| 932 |
+ |
return 1; |
| 933 |
+ |
break; |
| 934 |
+ |
|
| 935 |
+ |
case INT: |
| 936 |
+ |
tau_thermostat = (double)the_event->evt.asmt.rhs.ival; |
| 937 |
+ |
have_tau_thermostat = 1; |
| 938 |
+ |
return 1; |
| 939 |
+ |
break; |
| 940 |
+ |
|
| 941 |
+ |
default: |
| 942 |
+ |
the_event->err_msg = |
| 943 |
+ |
strdup( "Global error. tauThermostat unrecognized.\n" ); |
| 944 |
+ |
return 0; |
| 945 |
+ |
break; |
| 946 |
+ |
} |
| 947 |
+ |
break; |
| 948 |
+ |
|
| 949 |
+ |
case G_TAUBAROSTAT: |
| 950 |
+ |
switch( the_type ){ |
| 951 |
+ |
|
| 952 |
+ |
case STRING: |
| 953 |
+ |
the_event->err_msg = |
| 954 |
+ |
strdup( "Global error. tauBarostat is not a double or int.\n" ); |
| 955 |
+ |
return 0; |
| 956 |
+ |
break; |
| 957 |
+ |
|
| 958 |
+ |
case DOUBLE: |
| 959 |
+ |
tau_barostat = the_event->evt.asmt.rhs.dval; |
| 960 |
+ |
have_tau_barostat = 1; |
| 961 |
+ |
return 1; |
| 962 |
+ |
break; |
| 963 |
+ |
|
| 964 |
+ |
case INT: |
| 965 |
+ |
tau_barostat = (double)the_event->evt.asmt.rhs.ival; |
| 966 |
+ |
have_tau_barostat = 1; |
| 967 |
+ |
return 1; |
| 968 |
+ |
break; |
| 969 |
+ |
|
| 970 |
+ |
default: |
| 971 |
+ |
the_event->err_msg = |
| 972 |
+ |
strdup( "Global error. tauBarostat unrecognized.\n" ); |
| 973 |
+ |
return 0; |
| 974 |
+ |
break; |
| 975 |
+ |
} |
| 976 |
+ |
break; |
| 977 |
+ |
|
| 978 |
+ |
case G_ZCONSTIME: |
| 979 |
+ |
switch( the_type ){ |
| 980 |
+ |
|
| 981 |
+ |
case STRING: |
| 982 |
+ |
the_event->err_msg = |
| 983 |
+ |
strdup( "Global error. zcons_time is not a double or int.\n" ); |
| 984 |
+ |
return 0; |
| 985 |
+ |
break; |
| 986 |
+ |
|
| 987 |
+ |
case DOUBLE: |
| 988 |
+ |
zcons_time = the_event->evt.asmt.rhs.dval; |
| 989 |
+ |
return 1; |
| 990 |
+ |
break; |
| 991 |
+ |
|
| 992 |
+ |
case INT: |
| 993 |
+ |
zcons_time = (double)the_event->evt.asmt.rhs.ival; |
| 994 |
+ |
have_zcon_time = 1; |
| 995 |
+ |
return 1; |
| 996 |
+ |
break; |
| 997 |
+ |
|
| 998 |
+ |
default: |
| 999 |
+ |
the_event->err_msg = |
| 1000 |
+ |
strdup( "Global error. zcons_time unrecognized.\n" ); |
| 1001 |
+ |
return 0; |
| 1002 |
+ |
break; |
| 1003 |
+ |
} |
| 1004 |
+ |
break; |
| 1005 |
+ |
|
| 1006 |
+ |
|
| 1007 |
+ |
// add more token cases here. |
| 1008 |
+ |
|
| 1009 |
|
} |
| 1010 |
|
} |
| 1011 |
|
|