| 1 |
gezelter |
381 |
OOPSE |
| 2 |
mmeineke |
377 |
|
| 3 |
gezelter |
381 |
OOPSE is an open-source Object-Oriented Parallel Simulation Engine. |
| 4 |
gezelter |
444 |
It is a mongrel code which uses no less than 5 programming languages |
| 5 |
gezelter |
381 |
(although it is primarily written in C++ and Fortran95). Input files |
| 6 |
|
|
are handled using the (included) Bizarre Atom Simulation Syntax (BASS) |
| 7 |
|
|
library. The BASS library can handle atoms that don't fit the |
| 8 |
|
|
standard picture of what the rest of the world uses for atoms |
| 9 |
|
|
(i.e. our atoms can be "lumpy"; they have orientational degrees of |
| 10 |
|
|
freedom). We can also handle some transition metal simulations using |
| 11 |
|
|
the Embedded Atom Method (EAM) and other similar force fields. OOPSE |
| 12 |
|
|
doesn't yet do force fields with charges, although it does handles |
| 13 |
gezelter |
444 |
dipoles quite handily. |
| 14 |
gezelter |
381 |
|
| 15 |
|
|
What you need to compile and use OOPSE: |
| 16 |
|
|
|
| 17 |
|
|
0) A strong stomach. Mixed-language code can get ugly. |
| 18 |
|
|
|
| 19 |
gezelter |
444 |
1) *Good* C++ and Fortran95 compilers. We've built and tested OOPSE |
| 20 |
|
|
using the Intel compilers (ifc and icc) on Linux machines. Outside |
| 21 |
|
|
of our setup, you're pretty much on your own... |
| 22 |
gezelter |
381 |
|
| 23 |
|
|
2) MPI. We like MPICH. Other implementations might work, but we |
| 24 |
|
|
haven't tried. You can get MPICH here: |
| 25 |
|
|
http://www-unix.mcs.anl.gov/mpi/mpich/ |
| 26 |
|
|
|
| 27 |
|
|
3) The f90 bindings for MPI. These are built by MPICH if it finds a |
| 28 |
|
|
f90 compiler. There might be others out there for other |
| 29 |
|
|
implementations, but we haven't tested. Try starting here: |
| 30 |
|
|
http://duvel.lowtem.hokudai.ac.jp/~jim/software/f90_mpi_lib.html |
| 31 |
|
|
|
| 32 |
|
|
4) The Scalable Parallel Random Number Generators Library (SPRNG). You |
| 33 |
gezelter |
444 |
can obtain SPRNG here: |
| 34 |
|
|
http://archive.ncsa.uiuc.edu/Apps/CMP/RNG/RNG-home.html |
| 35 |
gezelter |
381 |
|
| 36 |
|
|
INSTRUCTIONS |
| 37 |
|
|
|
| 38 |
|
|
1) Get, build, and test the required pieces above. |
| 39 |
|
|
2) ./configure |
| 40 |
|
|
3) make |
| 41 |
|
|
4) make install |
| 42 |
|
|
|
| 43 |
|
|
That's it. Documentation is for wimps. |