Massive changes preparing for release of OOPSE-4: The main difference is that the new MD file format (.md, .dump, .eor) now contains meta-data information along with the configuration information.
change the globals.cpp to make sure we can set targetPressure and surfaceTension to be negative.
Added simulation box dipole moment accumulation for the purposes of calculating dielectric constants
Added TIP5P-E and fixed a bug for Thermodynamic integration (you can now have a lambda of 0)
Adding spherical boundary conditions to LD integrator
NPrT might work now
refactor Hydrodynamics module.
LangevinDynamics in progress
Removed MixingRule from Globals. Handled by forceField now.
Added NPAT to Globals integrators.
filepp can not handle multiple line macro, just convert multiple line macro into single line macro.
Made some changes to electrostatics for shifted-potential and shifted-force with mono and multipoles
instead of printing to std::cout, throwing an exception when error is found.
the standard library came with SUN compiler does not have a conforming std::use_facet, define a macro to handle it. Adding exception handling to SimCreator.
Fix parsing error in OptionSectionParser
End of the Link --> List Return of the Oject-Oriented replace yacc/lex parser with antlr parser
parsing by filepp
OptionSectionParser get compiled
ForceField optional parameters....
added in a 5th order polynomial switching function option
Added a keyword and ability to output forces and torques
improvements in shifted-force
changing how we deal with summation and screening methods
fixed a capitalization problem with NPT integrator initialization
Customized StatWriter is working
fix a seg fault when try copy a string to event's err_msg, there are still tons of memory leaking problem in Globals
Change error message in Globals
Constraints for parameters are working now
added default restraint spring constants into Globals
rewrite Globals
Added support for skinThickness keyword to Globals.
Added keywords for compressed dump files.
some fixes but even more breaking (cutting out the old way to do reaction field)
changes to include the coulombicCorrection selector
adding c-side interface to change cutoff Policy
made some changes for implementing the wolf potential
adding keyword printPressureTensor
NPrT in progress
NPAT is working
fix bug in NPAT and NPrT
adding NPAT and NPrT integrators
xemacs has been drafted to perform our indentation services
using map to replace link list
First commit of the new restraints code
Dunno
(1) complete section parser's error message (2) add GhostTorsion (3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor
merging new_design branch into OOPSE-2.0
change the #include in source files
Import of OOPSE v. 2.0
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