General bug-fixes and other changes to make particle pots work with the Helfand Energy correlation function
Added some logic to print out a special pair distance as a column in the stat file. To use this feature, use taggedAtomPair = "0, 10" and printTaggedPairDistance = "true" in the md file. Then, the distance between integrableObjects 0 and 10 will be computed and printed in the stat file on each statWrite.
Changes required for Inversions and Base Atom types. This will break OOPSE badly for a few days or so...
Changes for MnM forcefield.
Massive update to do virials (both atomic and cutoff-group) correctly. The rigid body constraint contributions had been missing and this was masked by the use of cutoff groups...
Added simulation box dipole moment accumulation for the purposes of calculating dielectric constants
Customized StatWriter is working
Added method to remove system angular momentum to velocitizer and added method to calculate system angular momentum to siminfo.
adding keyword printPressureTensor
xemacs has been drafted to perform our indentation services
merging new_design branch into OOPSE-2.0
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