Changes required for Inversions and Base Atom types. This will break OOPSE badly for a few days or so...
Massive update to do virials (both atomic and cutoff-group) correctly. The rigid body constraint contributions had been missing and this was masked by the use of cutoff groups...
OptionSectionParser get compiled
xemacs has been drafted to perform our indentation services
merging new_design branch into OOPSE-2.0
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