Changes to do hydrodynamics modeling and to explain a diff file
Massive changes for GB code with multiple ellipsoid types (a la Cleaver's paper). Also, changes in hydrodynamics code to make HydroProp a somewhat smarter class (rather than just a struct).
fixes for Hydrodynamics
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update writeBeads method
Fix a bug in friction calculation for ellipsoid
Verify the correctness of Ellipsoid's hydrodynamics properties
refactor Hydrodynamics module.
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