| 1 | 
/* | 
| 2 | 
 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 3 | 
 * | 
| 4 | 
 * The University of Notre Dame grants you ("Licensee") a | 
| 5 | 
 * non-exclusive, royalty free, license to use, modify and | 
| 6 | 
 * redistribute this software in source and binary code form, provided | 
| 7 | 
 * that the following conditions are met: | 
| 8 | 
 * | 
| 9 | 
 * 1. Acknowledgement of the program authors must be made in any | 
| 10 | 
 *    publication of scientific results based in part on use of the | 
| 11 | 
 *    program.  An acceptable form of acknowledgement is citation of | 
| 12 | 
 *    the article in which the program was described (Matthew | 
| 13 | 
 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 | 
 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 | 
 *    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 | 
 *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 | 
 * | 
| 18 | 
 * 2. Redistributions of source code must retain the above copyright | 
| 19 | 
 *    notice, this list of conditions and the following disclaimer. | 
| 20 | 
 * | 
| 21 | 
 * 3. Redistributions in binary form must reproduce the above copyright | 
| 22 | 
 *    notice, this list of conditions and the following disclaimer in the | 
| 23 | 
 *    documentation and/or other materials provided with the | 
| 24 | 
 *    distribution. | 
| 25 | 
 * | 
| 26 | 
 * This software is provided "AS IS," without a warranty of any | 
| 27 | 
 * kind. All express or implied conditions, representations and | 
| 28 | 
 * warranties, including any implied warranty of merchantability, | 
| 29 | 
 * fitness for a particular purpose or non-infringement, are hereby | 
| 30 | 
 * excluded.  The University of Notre Dame and its licensors shall not | 
| 31 | 
 * be liable for any damages suffered by licensee as a result of | 
| 32 | 
 * using, modifying or distributing the software or its | 
| 33 | 
 * derivatives. In no event will the University of Notre Dame or its | 
| 34 | 
 * licensors be liable for any lost revenue, profit or data, or for | 
| 35 | 
 * direct, indirect, special, consequential, incidental or punitive | 
| 36 | 
 * damages, however caused and regardless of the theory of liability, | 
| 37 | 
 * arising out of the use of or inability to use software, even if the | 
| 38 | 
 * University of Notre Dame has been advised of the possibility of | 
| 39 | 
 * such damages. | 
| 40 | 
 */ | 
| 41 | 
 | 
| 42 | 
#ifndef UTILS_BITSET_HPP | 
| 43 | 
#define UTILS_BITSET_HPP | 
| 44 | 
 | 
| 45 | 
#include <iostream> | 
| 46 | 
#include <vector> | 
| 47 | 
namespace oopse { | 
| 48 | 
 | 
| 49 | 
  /** | 
| 50 | 
   * @class OOPSEBitSet OOPSEBitSet.hpp "OOPSEBitSet.hpp" | 
| 51 | 
   * @brief OOPSEBitSet is a wrapper class of std::vector<char> to act as a growable std::bitset  | 
| 52 | 
   */ | 
| 53 | 
  class OOPSEBitSet { | 
| 54 | 
  public: | 
| 55 | 
    /** */ | 
| 56 | 
    OOPSEBitSet() {} | 
| 57 | 
    /** */ | 
| 58 | 
    OOPSEBitSet(int nbits) : bitset_(nbits) {clearAll(); } | 
| 59 | 
 | 
| 60 | 
    /** Returns the number of bits set to true in this OOPSEBitSet.  */ | 
| 61 | 
    int countBits(); | 
| 62 | 
 | 
| 63 | 
    /** Sets the bit at the specified index to to the complement of its current value. */ | 
| 64 | 
    void flip(int bitIndex) {  bitset_[bitIndex] = !bitset_[bitIndex];  } | 
| 65 | 
  | 
| 66 | 
    /** Sets each bit from the specified fromIndex(inclusive) to the specified toIndex(exclusive) to the complement of its current value. */ | 
| 67 | 
    void flip(int fromIndex, int toIndex);  | 
| 68 | 
 | 
| 69 | 
    /** Sets each bit to the complement of its current value. */ | 
| 70 | 
    void flip() { flip(0, size()); } | 
| 71 | 
         | 
| 72 | 
    /** Returns the value of the bit with the specified index. */ | 
| 73 | 
    bool get(int bitIndex) {  return bitset_[bitIndex];  } | 
| 74 | 
         | 
| 75 | 
    /** Returns a new OOPSEBitSet composed of bits from this OOPSEBitSet from fromIndex(inclusive) to toIndex(exclusive). */ | 
| 76 | 
    OOPSEBitSet get(int fromIndex, int toIndex);  | 
| 77 | 
         | 
| 78 | 
    /** Returns true if any bits are set to true */ | 
| 79 | 
    bool any() {return !none(); } | 
| 80 | 
 | 
| 81 | 
    /** Returns true if no bits are set to true */ | 
| 82 | 
    bool none(); | 
| 83 | 
 | 
| 84 | 
    int firstOffBit() const { return !bitset_[0] ? 0 : nextOffBit(0); } | 
| 85 | 
         | 
| 86 | 
    /** Returns the index of the first bit that is set to false that occurs on or after the specified starting index.*/ | 
| 87 | 
    int nextOffBit(int fromIndex) const;  | 
| 88 | 
 | 
| 89 | 
    int firstOnBit() const { return bitset_[0] ? 0 : nextOnBit(0); } | 
| 90 | 
         | 
| 91 | 
    /** Returns the index of the first bit that is set to true that occurs on or after the specified starting index. */ | 
| 92 | 
    int nextOnBit(int fromIndex) const;  | 
| 93 | 
         | 
| 94 | 
    /** Performs a logical AND of this target bit set with the argument bit set. */ | 
| 95 | 
    void andOperator (const OOPSEBitSet& bs); | 
| 96 | 
        | 
| 97 | 
    /** Performs a logical OR of this bit set with the bit set argument. */ | 
| 98 | 
    void orOperator (const OOPSEBitSet& bs);  | 
| 99 | 
         | 
| 100 | 
    /** Performs a logical XOR of this bit set with the bit set argument. */ | 
| 101 | 
    void xorOperator (const OOPSEBitSet& bs);         | 
| 102 | 
                | 
| 103 | 
    void setBitOn(int bitIndex) {  setBit(bitIndex, true);  } | 
| 104 | 
 | 
| 105 | 
    void setBitOff(int bitIndex) {  setBit(bitIndex, false);  } | 
| 106 | 
 | 
| 107 | 
    void setRangeOn(int fromIndex, int toIndex) {  setBits(fromIndex, toIndex, true);  } | 
| 108 | 
 | 
| 109 | 
    void setRangeOff(int fromIndex, int toIndex) {  setBits(fromIndex, toIndex, false);  }         | 
| 110 | 
 | 
| 111 | 
    /** Sets all of the bits in this OOPSEBitSet to false. */ | 
| 112 | 
    void clearAll() {  setRangeOff(0, size());  }          | 
| 113 | 
 | 
| 114 | 
    void setAll() {  setRangeOn(0, size());  }         | 
| 115 | 
         | 
| 116 | 
    /** Returns the number of bits of space actually in use by this OOPSEBitSet to represent bit values. */ | 
| 117 | 
    int size() const {  return bitset_.size();  } | 
| 118 | 
 | 
| 119 | 
    /** Changes the size of OOPSEBitSet*/ | 
| 120 | 
    void resize(int nbits); | 
| 121 | 
         | 
| 122 | 
    OOPSEBitSet& operator&= (const OOPSEBitSet &bs) {  andOperator (bs); return *this; } | 
| 123 | 
    OOPSEBitSet& operator|= (const OOPSEBitSet &bs) { orOperator (bs); return *this; } | 
| 124 | 
    OOPSEBitSet& operator^= (const OOPSEBitSet &bs) { xorOperator (bs); return *this; } | 
| 125 | 
    OOPSEBitSet& operator-= (const OOPSEBitSet &bs) {  | 
| 126 | 
      OOPSEBitSet tmp = *this ^ bs; | 
| 127 | 
      *this &= tmp; | 
| 128 | 
      return *this; | 
| 129 | 
    } | 
| 130 | 
         | 
| 131 | 
    bool operator[] (int bitIndex)  const {  return bitset_[bitIndex];  } | 
| 132 | 
    friend OOPSEBitSet operator| (const OOPSEBitSet& bs1, const OOPSEBitSet& bs2); | 
| 133 | 
    friend OOPSEBitSet operator& (const OOPSEBitSet& bs1, const OOPSEBitSet& bs2); | 
| 134 | 
    friend OOPSEBitSet operator^ (const OOPSEBitSet& bs1, const OOPSEBitSet& bs2); | 
| 135 | 
    friend OOPSEBitSet operator- (const OOPSEBitSet& bs1, const OOPSEBitSet& bs2); | 
| 136 | 
         | 
| 137 | 
    friend bool operator== (const OOPSEBitSet & bs1, const OOPSEBitSet &bs2); | 
| 138 | 
 | 
| 139 | 
    //friend std::istream& operator>> ( std::istream&, const OOPSEBitSet& bs); | 
| 140 | 
    friend std::ostream& operator<< ( std::ostream&, const OOPSEBitSet& bs) ; | 
| 141 | 
 | 
| 142 | 
  private: | 
| 143 | 
 | 
| 144 | 
    /** Sets the bit at the specified index to the specified value. */ | 
| 145 | 
    void setBit(int bitIndex, bool value) { bitset_[bitIndex] = value; } | 
| 146 | 
         | 
| 147 | 
    /** Sets the bits from the specified fromIndex(inclusive) to the specified toIndex(exclusive) to the specified value. */ | 
| 148 | 
    void setBits(int fromIndex, int toIndex, bool value); | 
| 149 | 
         | 
| 150 | 
    std::vector<char> bitset_; | 
| 151 | 
  }; | 
| 152 | 
 | 
| 153 | 
 | 
| 154 | 
} | 
| 155 | 
#endif |