| 1 | gezelter | 1930 | !! | 
| 2 |  |  | !! Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 3 |  |  | !! | 
| 4 |  |  | !! The University of Notre Dame grants you ("Licensee") a | 
| 5 |  |  | !! non-exclusive, royalty free, license to use, modify and | 
| 6 |  |  | !! redistribute this software in source and binary code form, provided | 
| 7 |  |  | !! that the following conditions are met: | 
| 8 |  |  | !! | 
| 9 |  |  | !! 1. Acknowledgement of the program authors must be made in any | 
| 10 |  |  | !!    publication of scientific results based in part on use of the | 
| 11 |  |  | !!    program.  An acceptable form of acknowledgement is citation of | 
| 12 |  |  | !!    the article in which the program was described (Matthew | 
| 13 |  |  | !!    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 |  |  | !!    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 |  |  | !!    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 |  |  | !!    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 |  |  | !! | 
| 18 |  |  | !! 2. Redistributions of source code must retain the above copyright | 
| 19 |  |  | !!    notice, this list of conditions and the following disclaimer. | 
| 20 |  |  | !! | 
| 21 |  |  | !! 3. Redistributions in binary form must reproduce the above copyright | 
| 22 |  |  | !!    notice, this list of conditions and the following disclaimer in the | 
| 23 |  |  | !!    documentation and/or other materials provided with the | 
| 24 |  |  | !!    distribution. | 
| 25 |  |  | !! | 
| 26 |  |  | !! This software is provided "AS IS," without a warranty of any | 
| 27 |  |  | !! kind. All express or implied conditions, representations and | 
| 28 |  |  | !! warranties, including any implied warranty of merchantability, | 
| 29 |  |  | !! fitness for a particular purpose or non-infringement, are hereby | 
| 30 |  |  | !! excluded.  The University of Notre Dame and its licensors shall not | 
| 31 |  |  | !! be liable for any damages suffered by licensee as a result of | 
| 32 |  |  | !! using, modifying or distributing the software or its | 
| 33 |  |  | !! derivatives. In no event will the University of Notre Dame or its | 
| 34 |  |  | !! licensors be liable for any lost revenue, profit or data, or for | 
| 35 |  |  | !! direct, indirect, special, consequential, incidental or punitive | 
| 36 |  |  | !! damages, however caused and regardless of the theory of liability, | 
| 37 |  |  | !! arising out of the use of or inability to use software, even if the | 
| 38 |  |  | !! University of Notre Dame has been advised of the possibility of | 
| 39 |  |  | !! such damages. | 
| 40 |  |  | !! | 
| 41 | chuckv | 1619 |  | 
| 42 | gezelter | 1930 |  | 
| 43 | chuckv | 1619 | !! MPI support for long range forces using force decomposition | 
| 44 |  |  | !! on a square grid of processors. | 
| 45 |  |  | !! Corresponds to mpiSimunation.cpp for C++ | 
| 46 |  |  | !! mpi_module also contains a private interface for mpi f90 routines. | 
| 47 |  |  | !! | 
| 48 |  |  | !! @author Charles F. Vardeman II | 
| 49 |  |  | !! @author Matthew Meineke | 
| 50 | chuckv | 2287 | !! @version $Id: simParallel.F90,v 1.5 2005-09-07 22:23:20 chuckv Exp $, $Date: 2005-09-07 22:23:20 $, $Name: not supported by cvs2svn $, $Revision: 1.5 $ | 
| 51 | chuckv | 1619 |  | 
| 52 |  |  | module mpiSimulation | 
| 53 |  |  | use definitions | 
| 54 |  |  | #ifdef IS_MPI | 
| 55 |  |  | use oopseMPI | 
| 56 |  |  | implicit none | 
| 57 |  |  | PRIVATE | 
| 58 |  |  |  | 
| 59 |  |  |  | 
| 60 | gezelter | 2204 | !! PUBLIC  Subroutines contained in this module | 
| 61 |  |  | !! gather and scatter are a generic interface | 
| 62 |  |  | !! to gather and scatter routines | 
| 63 | chuckv | 1619 | public :: gather, scatter | 
| 64 |  |  | public :: setupSimParallel | 
| 65 |  |  | public :: replanSimParallel | 
| 66 |  |  | public :: getNatomsInCol | 
| 67 |  |  | public :: getNatomsInRow | 
| 68 |  |  | public :: getNgroupsInCol | 
| 69 |  |  | public :: getNgroupsInRow | 
| 70 |  |  | public :: isMPISimSet | 
| 71 |  |  | public :: printComponentPlan | 
| 72 |  |  | public :: getMyNode | 
| 73 |  |  |  | 
| 74 | gezelter | 2204 | !! PUBLIC  Subroutines contained in MPI module | 
| 75 | chuckv | 1619 | public :: mpi_bcast | 
| 76 |  |  | public :: mpi_allreduce | 
| 77 | gezelter | 2204 | !  public :: mpi_reduce | 
| 78 | chuckv | 1619 | public :: mpi_send | 
| 79 |  |  | public :: mpi_recv | 
| 80 |  |  | public :: mpi_get_processor_name | 
| 81 |  |  | public :: mpi_finalize | 
| 82 |  |  |  | 
| 83 | gezelter | 2204 | !! PUBLIC mpi variables | 
| 84 | chuckv | 1619 | public :: mpi_comm_world | 
| 85 |  |  | public :: mpi_character | 
| 86 |  |  | public :: mpi_integer | 
| 87 | chuckv | 2287 | public :: mpi_lor | 
| 88 |  |  | public :: mpi_logical | 
| 89 | chuckv | 1619 | public :: mpi_double_precision | 
| 90 |  |  | public :: mpi_sum | 
| 91 |  |  | public :: mpi_max | 
| 92 |  |  | public :: mpi_status_size | 
| 93 |  |  | public :: mpi_any_source | 
| 94 |  |  |  | 
| 95 |  |  |  | 
| 96 |  |  |  | 
| 97 | gezelter | 2204 | !! Safety logical to prevent access to ComponetPlan until | 
| 98 |  |  | !! set by C++. | 
| 99 | chuckv | 1619 | logical, save :: ComponentPlanSet = .false. | 
| 100 |  |  |  | 
| 101 |  |  |  | 
| 102 | gezelter | 2204 | !! generic mpi error declaration. | 
| 103 | chuckv | 1619 | integer, public :: mpi_err | 
| 104 |  |  |  | 
| 105 |  |  | #ifdef PROFILE | 
| 106 |  |  | public :: printCommTime | 
| 107 |  |  | public :: getCommTime | 
| 108 |  |  | real,save   :: commTime = 0.0 | 
| 109 |  |  | real   :: commTimeInitial,commTimeFinal | 
| 110 |  |  | #endif | 
| 111 |  |  |  | 
| 112 | gezelter | 2204 | !! Include mpiComponentPlan type. mpiComponentPlan is a | 
| 113 |  |  | !! dual header file for both c and fortran. | 
| 114 | chuckv | 1619 | #define __FORTRAN90 | 
| 115 |  |  | #include "UseTheForce/mpiComponentPlan.h" | 
| 116 |  |  |  | 
| 117 |  |  |  | 
| 118 | gezelter | 2204 | !! Tags used during force loop for parallel simulation | 
| 119 | chuckv | 1619 | integer, public, allocatable, dimension(:) :: AtomLocalToGlobal | 
| 120 |  |  | integer, public, allocatable, dimension(:) :: AtomRowToGlobal | 
| 121 |  |  | integer, public, allocatable, dimension(:) :: AtomColToGlobal | 
| 122 |  |  | integer, public, allocatable, dimension(:) :: GroupLocalToGlobal | 
| 123 |  |  | integer, public, allocatable, dimension(:) :: GroupRowToGlobal | 
| 124 |  |  | integer, public, allocatable, dimension(:) :: GroupColToGlobal | 
| 125 |  |  |  | 
| 126 | gezelter | 2204 | !! Logical set true if mpiSimulation has been initialized | 
| 127 | chuckv | 1619 | logical, save :: isSimSet = .false. | 
| 128 |  |  |  | 
| 129 |  |  |  | 
| 130 |  |  | type (mpiComponentPlan), save :: mpiSim | 
| 131 |  |  |  | 
| 132 | gezelter | 2204 | !! gs_plan contains plans for gather and scatter routines | 
| 133 | chuckv | 1619 | type, public :: gs_plan | 
| 134 |  |  | private | 
| 135 |  |  | type (mpiComponentPlan), pointer :: gsComponentPlan => NULL() | 
| 136 |  |  | integer :: gsPlanSize !! size of this plan (nDim*nComponents) | 
| 137 |  |  | integer :: globalPlanSize !! size of all components in plan | 
| 138 |  |  | integer, dimension(:), pointer :: displs !! Displacements array for mpi indexed from 0. | 
| 139 |  |  | integer, dimension(:), pointer :: counts !! Counts array for mpi indexed from 0. | 
| 140 |  |  | integer :: myPlanComm  !! My communicator for this plan | 
| 141 |  |  | integer :: myPlanRank  !! My rank in this plan | 
| 142 |  |  | integer :: planNprocs  !! Number of processors in this plan | 
| 143 |  |  | end type gs_plan | 
| 144 |  |  |  | 
| 145 | gezelter | 2204 | ! plans for different decompositions | 
| 146 | chuckv | 1619 | type (gs_plan), public, save :: plan_atom_row | 
| 147 |  |  | type (gs_plan), public, save :: plan_atom_row_3d | 
| 148 |  |  | type (gs_plan), public, save :: plan_atom_col | 
| 149 |  |  | type (gs_plan), public, save :: plan_atom_col_3d | 
| 150 |  |  | type (gs_plan),  public, save :: plan_atom_row_Rotation | 
| 151 |  |  | type (gs_plan),  public, save :: plan_atom_col_Rotation | 
| 152 |  |  | type (gs_plan),  public, save :: plan_group_row | 
| 153 |  |  | type (gs_plan),  public, save :: plan_group_col | 
| 154 |  |  | type (gs_plan),  public, save :: plan_group_row_3d | 
| 155 |  |  | type (gs_plan),  public, save :: plan_group_col_3d | 
| 156 |  |  |  | 
| 157 |  |  | type (mpiComponentPlan), pointer :: simComponentPlan | 
| 158 |  |  |  | 
| 159 | gezelter | 2204 | ! interface for gather scatter routines | 
| 160 |  |  | !! Generic interface for gather. | 
| 161 |  |  | !! Gathers an local array into row or column array | 
| 162 |  |  | !! Interface provided for integer, double and double | 
| 163 |  |  | !! rank 2 arrays. | 
| 164 | chuckv | 1619 | interface gather | 
| 165 |  |  | module procedure gather_integer | 
| 166 |  |  | module procedure gather_double | 
| 167 |  |  | module procedure gather_double_2d | 
| 168 |  |  | end interface | 
| 169 |  |  |  | 
| 170 | gezelter | 2204 | !! Generic interface for scatter. | 
| 171 |  |  | !! Scatters a row or column array, adding componets | 
| 172 |  |  | !! and reducing them to a local nComponent array. | 
| 173 |  |  | !! Interface provided for double and double rank=2 arrays. | 
| 174 | chuckv | 1619 |  | 
| 175 |  |  | interface scatter | 
| 176 |  |  | module procedure scatter_double | 
| 177 |  |  | module procedure scatter_double_2d | 
| 178 |  |  | end interface | 
| 179 |  |  |  | 
| 180 |  |  |  | 
| 181 |  |  |  | 
| 182 |  |  | contains | 
| 183 |  |  |  | 
| 184 |  |  | !! Sets up mpiComponentPlan with structure passed from C++. | 
| 185 |  |  | subroutine setupSimParallel(thisComponentPlan, nAtomTags, atomTags, & | 
| 186 |  |  | nGroupTags, groupTags, status) | 
| 187 |  |  | !! Passed Arguments | 
| 188 |  |  | !! mpiComponentPlan struct from C | 
| 189 |  |  | type (mpiComponentPlan), intent(inout) :: thisComponentPlan | 
| 190 |  |  | !! Number of tags passed | 
| 191 |  |  | integer, intent(in) :: nAtomTags, nGroupTags | 
| 192 |  |  | !! Result status, 0 = normal, -1 = error | 
| 193 |  |  | integer, intent(out) :: status | 
| 194 |  |  | integer :: localStatus | 
| 195 |  |  | !! Global reference tag for local particles | 
| 196 |  |  | integer, dimension(nAtomTags), intent(inout) :: atomTags | 
| 197 |  |  | integer, dimension(nGroupTags), intent(inout) :: groupTags | 
| 198 |  |  |  | 
| 199 |  |  | !write(*,*) 'mpiSim_mod thinks node', thisComponentPlan%myNode, & | 
| 200 |  |  | !     ' has atomTags(1) = ', atomTags(1) | 
| 201 | gezelter | 2204 |  | 
| 202 | chuckv | 1619 | status = 0 | 
| 203 |  |  | if (componentPlanSet) then | 
| 204 |  |  | return | 
| 205 |  |  | endif | 
| 206 |  |  | componentPlanSet = .true. | 
| 207 | gezelter | 2204 |  | 
| 208 | chuckv | 1619 | !! copy c component plan to fortran | 
| 209 |  |  | mpiSim = thisComponentPlan | 
| 210 |  |  | !write(*,*) "Seting up simParallel" | 
| 211 | gezelter | 2204 |  | 
| 212 | chuckv | 1619 | call make_Force_Grid(mpiSim, localStatus) | 
| 213 |  |  | if (localStatus /= 0) then | 
| 214 |  |  | write(default_error,*) "Error creating force grid" | 
| 215 |  |  | status = -1 | 
| 216 |  |  | return | 
| 217 |  |  | endif | 
| 218 | gezelter | 2204 |  | 
| 219 | chuckv | 1619 | call updateGridComponents(mpiSim, localStatus) | 
| 220 |  |  | if (localStatus /= 0) then | 
| 221 |  |  | write(default_error,*) "Error updating grid components" | 
| 222 |  |  | status = -1 | 
| 223 |  |  | return | 
| 224 |  |  | endif | 
| 225 |  |  |  | 
| 226 |  |  | !! initialize gather and scatter plans used in this simulation | 
| 227 |  |  | call plan_gather_scatter(1, mpiSim%nAtomsLocal, & | 
| 228 |  |  | mpiSim, mpiSim%rowComm, plan_atom_row) | 
| 229 |  |  | call plan_gather_scatter(nDim, mpiSim%nAtomsLocal, & | 
| 230 |  |  | mpiSim, mpiSim%rowComm, plan_atom_row_3d) | 
| 231 |  |  | call plan_gather_scatter(9, mpiSim%nAtomsLocal, & | 
| 232 |  |  | mpiSim, mpiSim%rowComm, plan_atom_row_Rotation) | 
| 233 |  |  | call plan_gather_scatter(1, mpiSim%nGroupsLocal, & | 
| 234 |  |  | mpiSim, mpiSim%rowComm, plan_group_row) | 
| 235 |  |  | call plan_gather_scatter(nDim, mpiSim%nGroupsLocal, & | 
| 236 |  |  | mpiSim, mpiSim%rowComm, plan_group_row_3d) | 
| 237 | gezelter | 2204 |  | 
| 238 | chuckv | 1619 | call plan_gather_scatter(1, mpiSim%nAtomsLocal, & | 
| 239 |  |  | mpiSim, mpiSim%columnComm, plan_atom_col) | 
| 240 |  |  | call plan_gather_scatter(nDim, mpiSim%nAtomsLocal, & | 
| 241 |  |  | mpiSim, mpiSim%columnComm, plan_atom_col_3d) | 
| 242 |  |  | call plan_gather_scatter(9, mpiSim%nAtomsLocal, & | 
| 243 |  |  | mpiSim, mpiSim%columnComm, plan_atom_col_Rotation) | 
| 244 |  |  | call plan_gather_scatter(1, mpiSim%nGroupsLocal, & | 
| 245 |  |  | mpiSim, mpiSim%columnComm, plan_group_col) | 
| 246 |  |  | call plan_gather_scatter(nDim, mpiSim%nGroupsLocal, & | 
| 247 |  |  | mpiSim, mpiSim%columnComm, plan_group_col_3d) | 
| 248 |  |  |  | 
| 249 | gezelter | 2204 | !  Initialize tags | 
| 250 |  |  |  | 
| 251 | chuckv | 1619 | call setAtomTags(atomTags,localStatus) | 
| 252 |  |  | if (localStatus /= 0) then | 
| 253 |  |  | status = -1 | 
| 254 |  |  | return | 
| 255 |  |  | endif | 
| 256 |  |  |  | 
| 257 |  |  |  | 
| 258 |  |  | call setGroupTags(groupTags,localStatus) | 
| 259 |  |  | if (localStatus /= 0) then | 
| 260 |  |  | status = -1 | 
| 261 |  |  | return | 
| 262 |  |  | endif | 
| 263 |  |  |  | 
| 264 |  |  | isSimSet = .true. | 
| 265 |  |  |  | 
| 266 | gezelter | 2204 | !    call printComponentPlan(mpiSim,0) | 
| 267 | chuckv | 1619 | end subroutine setupSimParallel | 
| 268 |  |  |  | 
| 269 |  |  | subroutine replanSimParallel(thisComponentPlan,status) | 
| 270 | gezelter | 2204 | !  Passed Arguments | 
| 271 | chuckv | 1619 | !! mpiComponentPlan struct from C | 
| 272 |  |  | type (mpiComponentPlan), intent(inout) :: thisComponentPlan | 
| 273 |  |  | integer, intent(out) :: status | 
| 274 |  |  | integer :: localStatus | 
| 275 |  |  | integer :: mpierror | 
| 276 |  |  | status = 0 | 
| 277 |  |  |  | 
| 278 |  |  | call updateGridComponents(thisComponentPlan,localStatus) | 
| 279 |  |  | if (localStatus /= 0) then | 
| 280 |  |  | status = -1 | 
| 281 |  |  | return | 
| 282 |  |  | endif | 
| 283 | gezelter | 2204 |  | 
| 284 | chuckv | 1619 | !! Unplan Gather Scatter plans | 
| 285 |  |  | call unplan_gather_scatter(plan_atom_row) | 
| 286 |  |  | call unplan_gather_scatter(plan_atom_row_3d) | 
| 287 |  |  | call unplan_gather_scatter(plan_atom_row_Rotation) | 
| 288 |  |  | call unplan_gather_scatter(plan_group_row) | 
| 289 |  |  | call unplan_gather_scatter(plan_group_row_3d) | 
| 290 |  |  |  | 
| 291 |  |  | call unplan_gather_scatter(plan_atom_col) | 
| 292 |  |  | call unplan_gather_scatter(plan_atom_col_3d) | 
| 293 |  |  | call unplan_gather_scatter(plan_atom_col_Rotation) | 
| 294 |  |  | call unplan_gather_scatter(plan_group_col) | 
| 295 |  |  | call unplan_gather_scatter(plan_group_col_3d) | 
| 296 |  |  |  | 
| 297 |  |  | !! initialize gather and scatter plans used in this simulation | 
| 298 |  |  | call plan_gather_scatter(1, mpiSim%nAtomsLocal, & | 
| 299 |  |  | mpiSim, mpiSim%rowComm, plan_atom_row) | 
| 300 |  |  | call plan_gather_scatter(nDim, mpiSim%nAtomsLocal, & | 
| 301 |  |  | mpiSim, mpiSim%rowComm, plan_atom_row_3d) | 
| 302 |  |  | call plan_gather_scatter(9, mpiSim%nAtomsLocal, & | 
| 303 |  |  | mpiSim, mpiSim%rowComm, plan_atom_row_Rotation) | 
| 304 |  |  | call plan_gather_scatter(1, mpiSim%nGroupsLocal, & | 
| 305 |  |  | mpiSim, mpiSim%rowComm, plan_group_row) | 
| 306 |  |  | call plan_gather_scatter(nDim, mpiSim%nGroupsLocal, & | 
| 307 |  |  | mpiSim, mpiSim%rowComm, plan_group_row_3d) | 
| 308 | gezelter | 2204 |  | 
| 309 | chuckv | 1619 | call plan_gather_scatter(1, mpiSim%nAtomsLocal, & | 
| 310 |  |  | mpiSim, mpiSim%columnComm, plan_atom_col) | 
| 311 |  |  | call plan_gather_scatter(nDim, mpiSim%nAtomsLocal, & | 
| 312 |  |  | mpiSim, mpiSim%columnComm, plan_atom_col_3d) | 
| 313 |  |  | call plan_gather_scatter(9, mpiSim%nAtomsLocal, & | 
| 314 |  |  | mpiSim, mpiSim%columnComm, plan_atom_col_Rotation) | 
| 315 |  |  | call plan_gather_scatter(1, mpiSim%nGroupsLocal, & | 
| 316 |  |  | mpiSim, mpiSim%columnComm, plan_group_col) | 
| 317 |  |  | call plan_gather_scatter(nDim, mpiSim%nGroupsLocal, & | 
| 318 |  |  | mpiSim, mpiSim%columnComm, plan_group_col_3d) | 
| 319 | gezelter | 2204 |  | 
| 320 | chuckv | 1619 | end subroutine replanSimParallel | 
| 321 |  |  |  | 
| 322 |  |  | !! Updates number of row and column components for long range forces. | 
| 323 |  |  | subroutine updateGridComponents(thisComponentPlan, status) | 
| 324 |  |  | type (mpiComponentPlan) :: thisComponentPlan !! mpiComponentPlan | 
| 325 | gezelter | 2204 |  | 
| 326 | chuckv | 1619 | !! Status return | 
| 327 |  |  | !! -  0 Success | 
| 328 |  |  | !! - -1 Failure | 
| 329 |  |  | integer, intent(out) :: status | 
| 330 |  |  | integer :: nAtomsLocal | 
| 331 |  |  | integer :: nAtomsInRow = 0 | 
| 332 |  |  | integer :: nAtomsInColumn = 0 | 
| 333 |  |  | integer :: nGroupsLocal | 
| 334 |  |  | integer :: nGroupsInRow = 0 | 
| 335 |  |  | integer :: nGroupsInColumn = 0 | 
| 336 |  |  | integer :: mpiErrors | 
| 337 |  |  |  | 
| 338 |  |  | status = 0 | 
| 339 |  |  | if (.not. componentPlanSet) return | 
| 340 |  |  |  | 
| 341 |  |  | if (thisComponentPlan%nAtomsLocal == 0) then | 
| 342 |  |  | status = -1 | 
| 343 |  |  | return | 
| 344 | gezelter | 2204 | endif | 
| 345 | chuckv | 1619 | if (thisComponentPlan%nGroupsLocal == 0) then | 
| 346 |  |  | write(*,*) 'tcp%ngl = ', thisComponentPlan%nGroupsLocal | 
| 347 |  |  | status = -1 | 
| 348 |  |  | return | 
| 349 |  |  | endif | 
| 350 | gezelter | 2204 |  | 
| 351 | chuckv | 1619 | nAtomsLocal = thisComponentPlan%nAtomsLocal | 
| 352 |  |  | nGroupsLocal = thisComponentPlan%nGroupsLocal | 
| 353 |  |  |  | 
| 354 |  |  | call mpi_allreduce(nAtomsLocal, nAtomsInRow, 1, mpi_integer, & | 
| 355 |  |  | mpi_sum, thisComponentPlan%rowComm, mpiErrors) | 
| 356 |  |  | if (mpiErrors /= 0) then | 
| 357 |  |  | status = -1 | 
| 358 |  |  | return | 
| 359 |  |  | endif | 
| 360 |  |  |  | 
| 361 |  |  | call mpi_allreduce(nAtomsLocal, nAtomsInColumn, 1, mpi_integer, & | 
| 362 |  |  | mpi_sum, thisComponentPlan%columnComm, mpiErrors) | 
| 363 |  |  | if (mpiErrors /= 0) then | 
| 364 |  |  | status = -1 | 
| 365 |  |  | return | 
| 366 |  |  | endif | 
| 367 | gezelter | 2204 |  | 
| 368 | chuckv | 1619 | call mpi_allreduce(nGroupsLocal, nGroupsInRow, 1, mpi_integer, & | 
| 369 |  |  | mpi_sum, thisComponentPlan%rowComm, mpiErrors) | 
| 370 |  |  | if (mpiErrors /= 0) then | 
| 371 |  |  | status = -1 | 
| 372 |  |  | return | 
| 373 |  |  | endif | 
| 374 |  |  |  | 
| 375 |  |  | call mpi_allreduce(nGroupsLocal, nGroupsInColumn, 1, mpi_integer, & | 
| 376 |  |  | mpi_sum, thisComponentPlan%columnComm, mpiErrors) | 
| 377 |  |  | if (mpiErrors /= 0) then | 
| 378 |  |  | status = -1 | 
| 379 |  |  | return | 
| 380 |  |  | endif | 
| 381 |  |  |  | 
| 382 |  |  | thisComponentPlan%nAtomsInRow = nAtomsInRow | 
| 383 |  |  | thisComponentPlan%nAtomsInColumn = nAtomsInColumn | 
| 384 |  |  | thisComponentPlan%nGroupsInRow = nGroupsInRow | 
| 385 |  |  | thisComponentPlan%nGroupsInColumn = nGroupsInColumn | 
| 386 |  |  |  | 
| 387 |  |  | end subroutine updateGridComponents | 
| 388 |  |  |  | 
| 389 |  |  |  | 
| 390 |  |  | !! Creates a square force decomposition of processors into row and column | 
| 391 |  |  | !! communicators. | 
| 392 |  |  | subroutine make_Force_Grid(thisComponentPlan,status) | 
| 393 |  |  | type (mpiComponentPlan) :: thisComponentPlan | 
| 394 |  |  | integer, intent(out) :: status !! status returns -1 if error | 
| 395 |  |  | integer :: nColumnsMax !! Maximum number of columns | 
| 396 |  |  | integer :: nWorldProcessors !! Total number of processors in World comm. | 
| 397 |  |  | integer :: rowIndex !! Row for this processor. | 
| 398 |  |  | integer :: columnIndex !! Column for this processor. | 
| 399 |  |  | integer :: nRows !! Total number of rows. | 
| 400 |  |  | integer :: nColumns !! Total number of columns. | 
| 401 |  |  | integer :: mpiErrors !! MPI errors. | 
| 402 |  |  | integer :: rowCommunicator !! MPI row communicator. | 
| 403 |  |  | integer :: columnCommunicator | 
| 404 |  |  | integer :: myWorldRank | 
| 405 |  |  | integer :: i | 
| 406 |  |  |  | 
| 407 | gezelter | 2204 |  | 
| 408 | chuckv | 1619 | if (.not. ComponentPlanSet) return | 
| 409 |  |  | status = 0 | 
| 410 | gezelter | 2204 |  | 
| 411 | chuckv | 1619 | !! We make a dangerous assumption here that if numberProcessors is | 
| 412 |  |  | !! zero, then we need to get the information from MPI. | 
| 413 |  |  | if (thisComponentPlan%nProcessors == 0 ) then | 
| 414 |  |  | call mpi_comm_size( MPI_COMM_WORLD, nWorldProcessors,mpiErrors) | 
| 415 |  |  | if ( mpiErrors /= 0 ) then | 
| 416 |  |  | status = -1 | 
| 417 |  |  | return | 
| 418 |  |  | endif | 
| 419 |  |  | call mpi_comm_rank( MPI_COMM_WORLD,myWorldRank,mpiErrors) | 
| 420 |  |  | if ( mpiErrors /= 0 ) then | 
| 421 |  |  | status = -1 | 
| 422 |  |  | return | 
| 423 |  |  | endif | 
| 424 | gezelter | 2204 |  | 
| 425 | chuckv | 1619 | else | 
| 426 |  |  | nWorldProcessors = thisComponentPlan%nProcessors | 
| 427 |  |  | myWorldRank = thisComponentPlan%myNode | 
| 428 |  |  | endif | 
| 429 | gezelter | 2204 |  | 
| 430 | chuckv | 1619 | nColumnsMax = nint(sqrt(real(nWorldProcessors,kind=dp))) | 
| 431 | gezelter | 2204 |  | 
| 432 | chuckv | 1619 | do i = 1, nColumnsMax | 
| 433 |  |  | if (mod(nWorldProcessors,i) == 0) nColumns = i | 
| 434 |  |  | end do | 
| 435 | gezelter | 2204 |  | 
| 436 | chuckv | 1619 | nRows = nWorldProcessors/nColumns | 
| 437 | gezelter | 2204 |  | 
| 438 | chuckv | 1619 | rowIndex = myWorldRank/nColumns | 
| 439 | gezelter | 2204 |  | 
| 440 | chuckv | 1619 | call mpi_comm_split(mpi_comm_world,rowIndex,0,rowCommunicator,mpiErrors) | 
| 441 |  |  | if ( mpiErrors /= 0 ) then | 
| 442 |  |  | write(default_error,*) "MPI comm split failed at row communicator" | 
| 443 |  |  | status = -1 | 
| 444 |  |  | return | 
| 445 |  |  | endif | 
| 446 | gezelter | 2204 |  | 
| 447 | chuckv | 1619 | columnIndex = mod(myWorldRank,nColumns) | 
| 448 |  |  | call mpi_comm_split(mpi_comm_world,columnIndex,0,columnCommunicator,mpiErrors) | 
| 449 |  |  | if ( mpiErrors /= 0 ) then | 
| 450 |  |  | write(default_error,*) "MPI comm split faild at columnCommunicator" | 
| 451 |  |  | status = -1 | 
| 452 |  |  | return | 
| 453 |  |  | endif | 
| 454 | gezelter | 2204 |  | 
| 455 | chuckv | 1619 | ! Set appropriate components of thisComponentPlan | 
| 456 |  |  | thisComponentPlan%rowComm = rowCommunicator | 
| 457 |  |  | thisComponentPlan%columnComm = columnCommunicator | 
| 458 |  |  | thisComponentPlan%rowIndex = rowIndex | 
| 459 |  |  | thisComponentPlan%columnIndex = columnIndex | 
| 460 |  |  | thisComponentPlan%nRows = nRows | 
| 461 |  |  | thisComponentPlan%nColumns = nColumns | 
| 462 |  |  |  | 
| 463 |  |  | end subroutine make_Force_Grid | 
| 464 | gezelter | 2204 |  | 
| 465 | chuckv | 1619 | !! initalizes a gather scatter plan | 
| 466 |  |  | subroutine plan_gather_scatter( nDim, nObjects, thisComponentPlan, & | 
| 467 |  |  | thisComm, this_plan, status) | 
| 468 |  |  | integer, intent(in) :: nDim !! Number of dimensions for gather scatter plan | 
| 469 |  |  | integer, intent(in) :: nObjects | 
| 470 |  |  | type (mpiComponentPlan), intent(in), target :: thisComponentPlan | 
| 471 |  |  | type (gs_plan), intent(out) :: this_plan !! MPI Component Plan | 
| 472 |  |  | integer, intent(in) :: thisComm !! MPI communicator for this plan | 
| 473 |  |  |  | 
| 474 |  |  | integer :: arraySize !! size to allocate plan for | 
| 475 |  |  | integer, intent(out), optional :: status | 
| 476 |  |  | integer :: ierror | 
| 477 |  |  | integer :: i,junk | 
| 478 |  |  |  | 
| 479 |  |  | if (present(status)) status = 0 | 
| 480 |  |  |  | 
| 481 | gezelter | 2204 | !! Set gsComponentPlan pointer | 
| 482 |  |  | !! to the componet plan we want to use for this gather scatter plan. | 
| 483 |  |  | !! WARNING this could be dangerous since thisComponentPlan was origionally | 
| 484 |  |  | !! allocated in C++ and there is a significant difference between c and | 
| 485 |  |  | !! f95 pointers.... | 
| 486 | chuckv | 1619 | this_plan%gsComponentPlan => thisComponentPlan | 
| 487 |  |  |  | 
| 488 | gezelter | 2204 | ! Set this plan size for displs array. | 
| 489 | chuckv | 1619 | this_plan%gsPlanSize = nDim * nObjects | 
| 490 |  |  |  | 
| 491 | gezelter | 2204 | ! Duplicate communicator for this plan | 
| 492 | chuckv | 1619 | call mpi_comm_dup(thisComm, this_plan%myPlanComm, mpi_err) | 
| 493 |  |  | if (mpi_err /= 0) then | 
| 494 |  |  | if (present(status)) status = -1 | 
| 495 |  |  | return | 
| 496 |  |  | end if | 
| 497 |  |  | call mpi_comm_rank(this_plan%myPlanComm, this_plan%myPlanRank, mpi_err) | 
| 498 |  |  | if (mpi_err /= 0) then | 
| 499 |  |  | if (present(status)) status = -1 | 
| 500 |  |  | return | 
| 501 |  |  | end if | 
| 502 |  |  |  | 
| 503 |  |  | call mpi_comm_size(this_plan%myPlanComm, this_plan%planNprocs, mpi_err) | 
| 504 |  |  |  | 
| 505 |  |  | if (mpi_err /= 0) then | 
| 506 |  |  | if (present(status)) status = -1 | 
| 507 |  |  | return | 
| 508 |  |  | end if | 
| 509 |  |  |  | 
| 510 |  |  | !! counts and displacements arrays are indexed from 0 to be compatable | 
| 511 |  |  | !! with MPI arrays. | 
| 512 |  |  | allocate (this_plan%counts(0:this_plan%planNprocs-1),STAT=ierror) | 
| 513 |  |  | if (ierror /= 0) then | 
| 514 |  |  | if (present(status)) status = -1 | 
| 515 |  |  | return | 
| 516 |  |  | end if | 
| 517 |  |  |  | 
| 518 |  |  | allocate (this_plan%displs(0:this_plan%planNprocs-1),STAT=ierror) | 
| 519 |  |  | if (ierror /= 0) then | 
| 520 |  |  | if (present(status)) status = -1 | 
| 521 |  |  | return | 
| 522 |  |  | end if | 
| 523 |  |  |  | 
| 524 | gezelter | 2204 | !! gather all the local sizes into a size # processors array. | 
| 525 | chuckv | 1619 | call mpi_allgather(this_plan%gsPlanSize,1,mpi_integer,this_plan%counts, & | 
| 526 |  |  | 1,mpi_integer,thisComm,mpi_err) | 
| 527 |  |  |  | 
| 528 |  |  | if (mpi_err /= 0) then | 
| 529 |  |  | if (present(status)) status = -1 | 
| 530 |  |  | return | 
| 531 |  |  | end if | 
| 532 | gezelter | 2204 |  | 
| 533 | chuckv | 1619 | !! figure out the total number of particles in this plan | 
| 534 |  |  | this_plan%globalPlanSize = sum(this_plan%counts) | 
| 535 | gezelter | 2204 |  | 
| 536 | chuckv | 1619 | !! initialize plan displacements. | 
| 537 |  |  | this_plan%displs(0) = 0 | 
| 538 |  |  | do i = 1, this_plan%planNprocs - 1,1 | 
| 539 |  |  | this_plan%displs(i) = this_plan%displs(i-1) + this_plan%counts(i-1) | 
| 540 |  |  | end do | 
| 541 |  |  | end subroutine plan_gather_scatter | 
| 542 |  |  |  | 
| 543 |  |  | subroutine unplan_gather_scatter(this_plan) | 
| 544 |  |  | type (gs_plan), intent(inout) :: this_plan | 
| 545 | gezelter | 2204 |  | 
| 546 | chuckv | 1619 | this_plan%gsComponentPlan => null() | 
| 547 |  |  | call mpi_comm_free(this_plan%myPlanComm,mpi_err) | 
| 548 |  |  |  | 
| 549 |  |  | deallocate(this_plan%counts) | 
| 550 |  |  | deallocate(this_plan%displs) | 
| 551 |  |  |  | 
| 552 |  |  | end subroutine unplan_gather_scatter | 
| 553 |  |  |  | 
| 554 |  |  | subroutine gather_integer( sbuffer, rbuffer, this_plan, status) | 
| 555 |  |  |  | 
| 556 |  |  | type (gs_plan), intent(inout) :: this_plan | 
| 557 |  |  | integer, dimension(:), intent(inout) :: sbuffer | 
| 558 |  |  | integer, dimension(:), intent(inout) :: rbuffer | 
| 559 |  |  | integer :: noffset | 
| 560 |  |  | integer, intent(out), optional :: status | 
| 561 |  |  | integer :: i | 
| 562 |  |  |  | 
| 563 |  |  | if (present(status)) status = 0 | 
| 564 |  |  | noffset = this_plan%displs(this_plan%myPlanRank) | 
| 565 |  |  |  | 
| 566 | gezelter | 2204 | !    if (getmyNode() == 1) then | 
| 567 |  |  | !       write(*,*) "Node 0 printing allgatherv vars" | 
| 568 |  |  | !       write(*,*) "Noffset: ", noffset | 
| 569 |  |  | !       write(*,*) "PlanSize: ", this_plan%gsPlanSize | 
| 570 |  |  | !       write(*,*) "PlanComm: ", this_plan%myPlanComm | 
| 571 |  |  | !    end if | 
| 572 | chuckv | 1619 |  | 
| 573 |  |  | call mpi_allgatherv(sbuffer,this_plan%gsPlanSize, mpi_integer, & | 
| 574 |  |  | rbuffer,this_plan%counts,this_plan%displs,mpi_integer, & | 
| 575 |  |  | this_plan%myPlanComm, mpi_err) | 
| 576 |  |  |  | 
| 577 |  |  | if (mpi_err /= 0) then | 
| 578 | gezelter | 2204 | if (present(status)) status  = -1 | 
| 579 | chuckv | 1619 | endif | 
| 580 |  |  |  | 
| 581 |  |  | end subroutine gather_integer | 
| 582 |  |  |  | 
| 583 |  |  | subroutine gather_double( sbuffer, rbuffer, this_plan, status) | 
| 584 |  |  |  | 
| 585 |  |  | type (gs_plan), intent(in) :: this_plan | 
| 586 |  |  | real( kind = DP ), dimension(:), intent(inout) :: sbuffer | 
| 587 |  |  | real( kind = DP ), dimension(:), intent(inout) :: rbuffer | 
| 588 |  |  | integer :: noffset | 
| 589 |  |  | integer, intent(out), optional :: status | 
| 590 |  |  |  | 
| 591 |  |  |  | 
| 592 |  |  | if (present(status)) status = 0 | 
| 593 |  |  | noffset = this_plan%displs(this_plan%myPlanRank) | 
| 594 |  |  | #ifdef PROFILE | 
| 595 |  |  | call cpu_time(commTimeInitial) | 
| 596 |  |  | #endif | 
| 597 |  |  | call mpi_allgatherv(sbuffer,this_plan%gsPlanSize, mpi_double_precision, & | 
| 598 |  |  | rbuffer,this_plan%counts,this_plan%displs,mpi_double_precision, & | 
| 599 |  |  | this_plan%myPlanComm, mpi_err) | 
| 600 |  |  | #ifdef PROFILE | 
| 601 |  |  | call cpu_time(commTimeFinal) | 
| 602 |  |  | commTime = commTime + commTimeFinal - commTimeInitial | 
| 603 |  |  | #endif | 
| 604 |  |  |  | 
| 605 |  |  | if (mpi_err /= 0) then | 
| 606 | gezelter | 2204 | if (present(status)) status  = -1 | 
| 607 | chuckv | 1619 | endif | 
| 608 |  |  |  | 
| 609 |  |  | end subroutine gather_double | 
| 610 |  |  |  | 
| 611 |  |  | subroutine gather_double_2d( sbuffer, rbuffer, this_plan, status) | 
| 612 |  |  |  | 
| 613 |  |  | type (gs_plan), intent(in) :: this_plan | 
| 614 |  |  | real( kind = DP ), dimension(:,:), intent(inout) :: sbuffer | 
| 615 |  |  | real( kind = DP ), dimension(:,:), intent(inout) :: rbuffer | 
| 616 |  |  | integer :: noffset,i,ierror | 
| 617 |  |  | integer, intent(out), optional :: status | 
| 618 | gezelter | 2204 |  | 
| 619 | chuckv | 1619 | external  mpi_allgatherv | 
| 620 |  |  |  | 
| 621 | gezelter | 2204 | if (present(status)) status = 0 | 
| 622 |  |  |  | 
| 623 |  |  | !    noffset = this_plan%displs(this_plan%me) | 
| 624 | chuckv | 1619 | #ifdef PROFILE | 
| 625 | gezelter | 2204 | call cpu_time(commTimeInitial) | 
| 626 | chuckv | 1619 | #endif | 
| 627 |  |  |  | 
| 628 |  |  | call mpi_allgatherv(sbuffer,this_plan%gsPlanSize, mpi_double_precision, & | 
| 629 | gezelter | 2204 | rbuffer,this_plan%counts,this_plan%displs,mpi_double_precision, & | 
| 630 |  |  | this_plan%myPlanComm, mpi_err) | 
| 631 | chuckv | 1619 |  | 
| 632 |  |  | #ifdef PROFILE | 
| 633 |  |  | call cpu_time(commTimeFinal) | 
| 634 |  |  | commTime = commTime + commTimeFinal - commTimeInitial | 
| 635 |  |  | #endif | 
| 636 |  |  |  | 
| 637 |  |  | if (mpi_err /= 0) then | 
| 638 | gezelter | 2204 | if (present(status)) status = -1 | 
| 639 | chuckv | 1619 | endif | 
| 640 |  |  |  | 
| 641 | gezelter | 2204 | end subroutine gather_double_2d | 
| 642 | chuckv | 1619 |  | 
| 643 |  |  | subroutine scatter_double( sbuffer, rbuffer, this_plan, status) | 
| 644 |  |  |  | 
| 645 |  |  | type (gs_plan), intent(in) :: this_plan | 
| 646 |  |  | real( kind = DP ), dimension(:), intent(inout) :: sbuffer | 
| 647 |  |  | real( kind = DP ), dimension(:), intent(inout) :: rbuffer | 
| 648 |  |  | integer, intent(out), optional :: status | 
| 649 |  |  | external mpi_reduce_scatter | 
| 650 |  |  |  | 
| 651 | gezelter | 2204 | if (present(status)) status = 0 | 
| 652 | chuckv | 1619 |  | 
| 653 |  |  | #ifdef PROFILE | 
| 654 | gezelter | 2204 | call cpu_time(commTimeInitial) | 
| 655 | chuckv | 1619 | #endif | 
| 656 |  |  | call mpi_reduce_scatter(sbuffer,rbuffer, this_plan%counts, & | 
| 657 |  |  | mpi_double_precision, MPI_SUM, this_plan%myPlanComm, mpi_err) | 
| 658 |  |  | #ifdef PROFILE | 
| 659 |  |  | call cpu_time(commTimeFinal) | 
| 660 |  |  | commTime = commTime + commTimeFinal - commTimeInitial | 
| 661 |  |  | #endif | 
| 662 |  |  |  | 
| 663 |  |  | if (mpi_err /= 0) then | 
| 664 | gezelter | 2204 | if (present(status))  status = -1 | 
| 665 | chuckv | 1619 | endif | 
| 666 |  |  |  | 
| 667 |  |  | end subroutine scatter_double | 
| 668 |  |  |  | 
| 669 |  |  | subroutine scatter_double_2d( sbuffer, rbuffer, this_plan, status) | 
| 670 |  |  |  | 
| 671 |  |  | type (gs_plan), intent(in) :: this_plan | 
| 672 |  |  | real( kind = DP ), dimension(:,:), intent(inout) :: sbuffer | 
| 673 |  |  | real( kind = DP ), dimension(:,:), intent(inout) :: rbuffer | 
| 674 |  |  | integer, intent(out), optional :: status | 
| 675 |  |  | external mpi_reduce_scatter | 
| 676 | gezelter | 2204 |  | 
| 677 |  |  | if (present(status)) status = 0 | 
| 678 | chuckv | 1619 | #ifdef PROFILE | 
| 679 | gezelter | 2204 | call cpu_time(commTimeInitial) | 
| 680 | chuckv | 1619 | #endif | 
| 681 |  |  |  | 
| 682 |  |  | call mpi_reduce_scatter(sbuffer,rbuffer, this_plan%counts, & | 
| 683 |  |  | mpi_double_precision, MPI_SUM, this_plan%myPlanComm, mpi_err) | 
| 684 |  |  | #ifdef PROFILE | 
| 685 |  |  | call cpu_time(commTimeFinal) | 
| 686 |  |  | commTime = commTime + commTimeFinal - commTimeInitial | 
| 687 |  |  | #endif | 
| 688 |  |  |  | 
| 689 |  |  | if (mpi_err /= 0) then | 
| 690 | gezelter | 2204 | if (present(status)) status = -1 | 
| 691 | chuckv | 1619 | endif | 
| 692 |  |  |  | 
| 693 |  |  | end subroutine scatter_double_2d | 
| 694 | gezelter | 2204 |  | 
| 695 | chuckv | 1619 | subroutine setAtomTags(tags, status) | 
| 696 |  |  | integer, dimension(:) :: tags | 
| 697 |  |  | integer :: status | 
| 698 |  |  |  | 
| 699 |  |  | integer :: alloc_stat | 
| 700 | gezelter | 2204 |  | 
| 701 | chuckv | 1619 | integer :: nAtomsInCol | 
| 702 |  |  | integer :: nAtomsInRow | 
| 703 |  |  |  | 
| 704 |  |  | status = 0 | 
| 705 | gezelter | 2204 | ! allocate row arrays | 
| 706 | chuckv | 1619 | nAtomsInRow = getNatomsInRow(plan_atom_row) | 
| 707 |  |  | nAtomsInCol = getNatomsInCol(plan_atom_col) | 
| 708 | gezelter | 2204 |  | 
| 709 | chuckv | 1619 | if(.not. allocated(AtomLocalToGlobal)) then | 
| 710 |  |  | allocate(AtomLocalToGlobal(size(tags)),STAT=alloc_stat) | 
| 711 | gezelter | 2204 | if (alloc_stat /= 0 ) then | 
| 712 | chuckv | 1619 | status = -1 | 
| 713 |  |  | return | 
| 714 |  |  | endif | 
| 715 |  |  | else | 
| 716 |  |  | deallocate(AtomLocalToGlobal) | 
| 717 |  |  | allocate(AtomLocalToGlobal(size(tags)),STAT=alloc_stat) | 
| 718 |  |  | if (alloc_stat /= 0 ) then | 
| 719 |  |  | status = -1 | 
| 720 |  |  | return | 
| 721 |  |  | endif | 
| 722 |  |  |  | 
| 723 |  |  | endif | 
| 724 |  |  |  | 
| 725 |  |  | AtomLocalToGlobal = tags | 
| 726 |  |  |  | 
| 727 |  |  | if (.not. allocated(AtomRowToGlobal)) then | 
| 728 |  |  | allocate(AtomRowToGlobal(nAtomsInRow),STAT=alloc_stat) | 
| 729 |  |  | if (alloc_stat /= 0 ) then | 
| 730 |  |  | status = -1 | 
| 731 |  |  | return | 
| 732 |  |  | endif | 
| 733 |  |  | else | 
| 734 |  |  | deallocate(AtomRowToGlobal) | 
| 735 |  |  | allocate(AtomRowToGlobal(nAtomsInRow),STAT=alloc_stat) | 
| 736 |  |  | if (alloc_stat /= 0 ) then | 
| 737 |  |  | status = -1 | 
| 738 |  |  | return | 
| 739 |  |  | endif | 
| 740 |  |  |  | 
| 741 |  |  | endif | 
| 742 | gezelter | 2204 | ! allocate column arrays | 
| 743 | chuckv | 1619 | if (.not. allocated(AtomColToGlobal)) then | 
| 744 |  |  | allocate(AtomColToGlobal(nAtomsInCol),STAT=alloc_stat) | 
| 745 |  |  | if (alloc_stat /= 0 ) then | 
| 746 |  |  | status = -1 | 
| 747 |  |  | return | 
| 748 |  |  | endif | 
| 749 |  |  | else | 
| 750 |  |  | deallocate(AtomColToGlobal) | 
| 751 |  |  | allocate(AtomColToGlobal(nAtomsInCol),STAT=alloc_stat) | 
| 752 |  |  | if (alloc_stat /= 0 ) then | 
| 753 |  |  | status = -1 | 
| 754 |  |  | return | 
| 755 |  |  | endif | 
| 756 |  |  | endif | 
| 757 | gezelter | 2204 |  | 
| 758 | chuckv | 1619 | call gather(tags, AtomRowToGlobal, plan_atom_row) | 
| 759 |  |  | call gather(tags, AtomColToGlobal, plan_atom_col) | 
| 760 | gezelter | 2204 |  | 
| 761 | chuckv | 1619 | end subroutine setAtomTags | 
| 762 |  |  |  | 
| 763 |  |  | subroutine setGroupTags(tags, status) | 
| 764 |  |  | integer, dimension(:) :: tags | 
| 765 |  |  | integer :: status | 
| 766 |  |  |  | 
| 767 |  |  | integer :: alloc_stat | 
| 768 | gezelter | 2204 |  | 
| 769 | chuckv | 1619 | integer :: nGroupsInCol | 
| 770 |  |  | integer :: nGroupsInRow | 
| 771 |  |  |  | 
| 772 |  |  | status = 0 | 
| 773 |  |  |  | 
| 774 |  |  | nGroupsInRow = getNgroupsInRow(plan_group_row) | 
| 775 |  |  | nGroupsInCol = getNgroupsInCol(plan_group_col) | 
| 776 | gezelter | 2204 |  | 
| 777 | chuckv | 1619 | if(allocated(GroupLocalToGlobal)) then | 
| 778 |  |  | deallocate(GroupLocalToGlobal) | 
| 779 |  |  | endif | 
| 780 |  |  | allocate(GroupLocalToGlobal(size(tags)),STAT=alloc_stat) | 
| 781 |  |  | if (alloc_stat /= 0 ) then | 
| 782 |  |  | status = -1 | 
| 783 |  |  | return | 
| 784 |  |  | endif | 
| 785 | gezelter | 2204 |  | 
| 786 | chuckv | 1619 | GroupLocalToGlobal = tags | 
| 787 |  |  |  | 
| 788 |  |  | if(allocated(GroupRowToGlobal)) then | 
| 789 |  |  | deallocate(GroupRowToGlobal) | 
| 790 |  |  | endif | 
| 791 |  |  | allocate(GroupRowToGlobal(nGroupsInRow),STAT=alloc_stat) | 
| 792 |  |  | if (alloc_stat /= 0 ) then | 
| 793 |  |  | status = -1 | 
| 794 |  |  | return | 
| 795 |  |  | endif | 
| 796 |  |  |  | 
| 797 |  |  | if(allocated(GroupColToGlobal)) then | 
| 798 |  |  | deallocate(GroupColToGlobal) | 
| 799 |  |  | endif | 
| 800 |  |  | allocate(GroupColToGlobal(nGroupsInCol),STAT=alloc_stat) | 
| 801 |  |  | if (alloc_stat /= 0 ) then | 
| 802 |  |  | status = -1 | 
| 803 |  |  | return | 
| 804 |  |  | endif | 
| 805 | gezelter | 2204 |  | 
| 806 | chuckv | 1619 | call gather(tags, GroupRowToGlobal, plan_group_row) | 
| 807 |  |  | call gather(tags, GroupColToGlobal, plan_group_col) | 
| 808 | gezelter | 2204 |  | 
| 809 | chuckv | 1619 | end subroutine setGroupTags | 
| 810 | gezelter | 2204 |  | 
| 811 | chuckv | 1619 | function getNatomsInCol(thisplan) result(nInCol) | 
| 812 |  |  | type (gs_plan), intent(in) :: thisplan | 
| 813 |  |  | integer :: nInCol | 
| 814 |  |  | nInCol = thisplan%gsComponentPlan%nAtomsInColumn | 
| 815 |  |  | end function getNatomsInCol | 
| 816 |  |  |  | 
| 817 |  |  | function getNatomsInRow(thisplan) result(nInRow) | 
| 818 |  |  | type (gs_plan), intent(in) :: thisplan | 
| 819 |  |  | integer :: nInRow | 
| 820 |  |  | nInRow = thisplan%gsComponentPlan%nAtomsInRow | 
| 821 |  |  | end function getNatomsInRow | 
| 822 | gezelter | 2204 |  | 
| 823 | chuckv | 1619 | function getNgroupsInCol(thisplan) result(nInCol) | 
| 824 |  |  | type (gs_plan), intent(in) :: thisplan | 
| 825 |  |  | integer :: nInCol | 
| 826 |  |  | nInCol = thisplan%gsComponentPlan%nGroupsInColumn | 
| 827 |  |  | end function getNgroupsInCol | 
| 828 |  |  |  | 
| 829 |  |  | function getNgroupsInRow(thisplan) result(nInRow) | 
| 830 |  |  | type (gs_plan), intent(in) :: thisplan | 
| 831 |  |  | integer :: nInRow | 
| 832 |  |  | nInRow = thisplan%gsComponentPlan%nGroupsInRow | 
| 833 |  |  | end function getNgroupsInRow | 
| 834 | gezelter | 2204 |  | 
| 835 | chuckv | 1619 | function isMPISimSet() result(isthisSimSet) | 
| 836 |  |  | logical :: isthisSimSet | 
| 837 |  |  | if (isSimSet) then | 
| 838 |  |  | isthisSimSet = .true. | 
| 839 |  |  | else | 
| 840 |  |  | isthisSimSet = .false. | 
| 841 |  |  | endif | 
| 842 |  |  | end function isMPISimSet | 
| 843 | gezelter | 2204 |  | 
| 844 | chuckv | 1619 | subroutine printComponentPlan(this_plan,printNode) | 
| 845 |  |  |  | 
| 846 |  |  | type (mpiComponentPlan), intent(in) :: this_plan | 
| 847 |  |  | integer, optional :: printNode | 
| 848 |  |  | logical :: print_me = .false. | 
| 849 |  |  |  | 
| 850 |  |  | if (present(printNode)) then | 
| 851 |  |  | if (printNode == mpiSim%myNode) print_me = .true. | 
| 852 |  |  | else | 
| 853 |  |  | print_me = .true. | 
| 854 |  |  | endif | 
| 855 |  |  |  | 
| 856 |  |  | if (print_me) then | 
| 857 |  |  | write(default_error,*) "SetupSimParallel: writing component plan" | 
| 858 | gezelter | 2204 |  | 
| 859 | chuckv | 1619 | write(default_error,*) "nMolGlobal: ", mpiSim%nMolGlobal | 
| 860 |  |  | write(default_error,*) "nAtomsGlobal: ", mpiSim%nAtomsGlobal | 
| 861 |  |  | write(default_error,*) "nAtomsLocal: ", mpiSim%nAtomsLocal | 
| 862 |  |  | write(default_error,*) "myNode: ", mpiSim%myNode | 
| 863 |  |  | write(default_error,*) "nProcessors: ", mpiSim%nProcessors | 
| 864 |  |  | write(default_error,*) "rowComm: ", mpiSim%rowComm | 
| 865 |  |  | write(default_error,*) "columnComm: ", mpiSim%columnComm | 
| 866 |  |  | write(default_error,*) "nRows: ", mpiSim%nRows | 
| 867 |  |  | write(default_error,*) "nColumns: ", mpiSim%nColumns | 
| 868 |  |  | write(default_error,*) "nAtomsInRow: ", mpiSim%nAtomsInRow | 
| 869 |  |  | write(default_error,*) "nAtomsInColumn: ", mpiSim%nAtomsInColumn | 
| 870 |  |  | write(default_error,*) "rowIndex: ", mpiSim%rowIndex | 
| 871 |  |  | write(default_error,*) "columnIndex: ", mpiSim%columnIndex | 
| 872 |  |  | endif | 
| 873 |  |  | end subroutine printComponentPlan | 
| 874 |  |  |  | 
| 875 |  |  | function getMyNode() result(myNode) | 
| 876 |  |  | integer :: myNode | 
| 877 |  |  | myNode = mpiSim%myNode | 
| 878 |  |  | end function getMyNode | 
| 879 |  |  |  | 
| 880 |  |  | #ifdef PROFILE | 
| 881 |  |  | subroutine printCommTime() | 
| 882 |  |  | write(*,*) "MPI communication time is: ", commTime | 
| 883 |  |  | end subroutine printCommTime | 
| 884 |  |  |  | 
| 885 |  |  | function getCommTime() result(comm_time) | 
| 886 |  |  | real :: comm_time | 
| 887 |  |  | comm_time = commTime | 
| 888 |  |  | end function getCommTime | 
| 889 |  |  |  | 
| 890 |  |  | #endif | 
| 891 |  |  |  | 
| 892 |  |  | #endif // is_mpi | 
| 893 |  |  | end module mpiSimulation | 
| 894 |  |  |  |