using map to replace link list
First commit of the new restraints code
(1) complete section parser's error message (2) add GhostTorsion (3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor
merging new_design branch into OOPSE-2.0
change the #include in source files
Import of OOPSE v. 2.0
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