| 1 |
|
#ifndef __SIMSETUP_H__ |
| 2 |
|
#define __SIMSETUP_H__ |
| 3 |
< |
|
| 3 |
> |
#include <string> |
| 4 |
> |
#include "StringUtils.hpp" |
| 5 |
|
#include "MakeStamps.hpp" |
| 6 |
|
#include "Globals.hpp" |
| 7 |
|
#include "ForceFields.hpp" |
| 9 |
|
#include "ReadWrite.hpp" |
| 10 |
|
#include "AllIntegrator.hpp" |
| 11 |
|
|
| 12 |
+ |
using namespace std; |
| 13 |
|
// this routine is defined in BASS_interface.cpp |
| 14 |
|
extern void set_interface_stamps( MakeStamps* ms, Globals* g ); |
| 15 |
|
|
| 25 |
|
void parseFile( char* fileName ); |
| 26 |
|
void createSim( void ); |
| 27 |
|
|
| 26 |
– |
|
| 28 |
|
private: |
| 29 |
|
|
| 30 |
|
#ifdef IS_MPI |
| 53 |
|
|
| 54 |
|
#endif //is_mpi |
| 55 |
|
|
| 56 |
< |
void initFromBass( void ); |
| 56 |
> |
void initFromMetaDataFile( void ); |
| 57 |
|
void makeMolecules( void ); |
| 58 |
|
void makeElement( double x, double y, double z ); |
| 59 |
|
|