This commit was generated by cvs2svn to compensate for changes in r56, which
included commits to RCS files with non-trunk default branches.

added all of the pictures. And gave a practice talk based on this version. Now begins the process of cleanup and additions
of citations.

Skeletons of most every slide

This commit was generated by cvs2svn to compensate for changes in r49, which
included commits to RCS files with non-trunk default branches.

added the cos correlation function

finished working on the command line options, and started working on the GofR

added the GofR header, and moved the strructure definitions to the madProps.h

made a header directory, and fixed the Makefile to work with it

the new header dir

took out a reference file

fixed the ordering on the end of file test

This commit was generated by cvs2svn to compensate for changes in r34, which
included commits to RCS files with non-trunk default branches.

fixed makeRandom to set up a correct simulation

added the getA( double the_A[3][3] ) routine to the Directional Atom Class, to facilitate easier RotMat aquisition

adding a program to make a lipid configuration with random dispersion of lipids.

removed xLate.cpp which was part of a seperate project

removed a misc file

This commit was generated by cvs2svn to compensate for changes in r20, which
included commits to RCS files with non-trunk default branches.

This commit was generated by cvs2svn to compensate for changes in r16, which
included commits to RCS files with non-trunk default branches.

This commit was generated by cvs2svn to compensate for changes in r12, which
included commits to RCS files with non-trunk default branches.

nose hoover chains added

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initial checkin

Standard project directories initialized by cvs2svn.