| 525 |
|
double zsys; |
| 526 |
|
double COM[3]; |
| 527 |
|
double force[3]; |
| 528 |
+ |
double zSysCOMVel; |
| 529 |
|
|
| 530 |
|
T::calcForce(calcPot, calcStress); |
| 531 |
|
|
| 533 |
|
zeroOutVel(); |
| 534 |
|
forcePolicy->update(); |
| 535 |
|
} |
| 536 |
+ |
|
| 537 |
|
zsys = calcZSys(); |
| 538 |
< |
cout << "---------------------------------------------------------------------" <<endl; |
| 539 |
< |
cout << "current time: " << info->getTime() << endl; |
| 540 |
< |
cout << "center of mass at z: " << zsys << endl; |
| 541 |
< |
//cout << "before calcForce, the COMVel of moving molecules is " << calcMovingMolsCOMVel() <<endl; |
| 542 |
< |
cout << "before calcForce, the COMVel of system is " << calcSysCOMVel() <<endl; |
| 538 |
> |
zSysCOMVel = calcSysCOMVel(); |
| 539 |
> |
#ifdef IS_MPI |
| 540 |
> |
if(worldRank == 0){ |
| 541 |
> |
#endif |
| 542 |
> |
cout << "---------------------------------------------------------------------" <<endl; |
| 543 |
> |
cout << "current time: " << info->getTime() << endl; |
| 544 |
> |
cout << "center of mass at z: " << zsys << endl; |
| 545 |
> |
cout << "before calcForce, the COMVel of system is " << zSysCOMVel <<endl; |
| 546 |
|
|
| 547 |
< |
//cout << "before doZConstraintForce, totalForce is " << calcTotalForce() << endl; |
| 547 |
> |
#ifdef IS_MPI |
| 548 |
> |
} |
| 549 |
> |
#endif |
| 550 |
|
|
| 551 |
|
//do zconstraint force; |
| 552 |
|
if (haveFixedZMols()) |
| 556 |
|
if (haveMovingZMols()) |
| 557 |
|
this->doHarmonic(); |
| 558 |
|
|
| 552 |
– |
//cout << "after doHarmonic, totalForce is " << calcTotalForce() << endl; |
| 553 |
– |
|
| 559 |
|
//write out forces and current positions of z-constraint molecules |
| 560 |
|
if(info->getTime() >= curZconsTime){ |
| 561 |
|
for(int i = 0; i < zconsMols.size(); i++){ |
| 576 |
|
fzOut->writeFZ(info->getTime(), zconsMols.size(), indexOfZConsMols, fz, curZPos); |
| 577 |
|
curZconsTime += zconsTime; |
| 578 |
|
} |
| 579 |
< |
|
| 580 |
< |
//cout << "after calcForce, the COMVel of moving molecules is " << calcMovingMolsCOMVel() <<endl; |
| 581 |
< |
cout << "after calcForce, the COMVel of system is " << calcSysCOMVel() <<endl; |
| 579 |
> |
|
| 580 |
> |
zSysCOMVel = calcSysCOMVel(); |
| 581 |
> |
#ifdef IS_MPI |
| 582 |
> |
if(worldRank == 0){ |
| 583 |
> |
#endif |
| 584 |
> |
cout << "after calcForce, the COMVel of system is " << zSysCOMVel <<endl; |
| 585 |
> |
#ifdef IS_MPI |
| 586 |
> |
} |
| 587 |
> |
#endif |
| 588 |
> |
|
| 589 |
|
} |
| 590 |
|
|
| 591 |
|
|
| 798 |
|
} |
| 799 |
|
totalFZ_local += fz[i]; |
| 800 |
|
|
| 801 |
< |
cout << "Fixed Molecule --\tindex: " << indexOfZConsMols[i] |
| 801 |
> |
cout << "Fixed Molecule\tindex: " << indexOfZConsMols[i] |
| 802 |
|
<<"\tcurrent zpos: " << COM[whichDirection] |
| 803 |
|
<< "\tcurrent fz: " <<fz[i] << endl; |
| 804 |
|
|
| 915 |
|
|
| 916 |
|
if (states[i] == zcsMoving){ |
| 917 |
|
zconsMols[i]->getCOM(COM); |
| 918 |
< |
cout << "Moving Molecule --\tindex: " << indexOfZConsMols[i] <<"\tcurrent zpos: " << COM[whichDirection] << endl; |
| 918 |
> |
cout << "Moving Molecule\tindex: " << indexOfZConsMols[i] <<"\tcurrent zpos: " << COM[whichDirection] << endl; |
| 919 |
|
|
| 920 |
|
diff = COM[whichDirection] -zPos[i]; |
| 921 |
|
|