| 276 |
|
massOfZConsMols.push_back(molecules[i].getTotalMass()); |
| 277 |
|
|
| 278 |
|
zPos.push_back((*parameters)[searchResult].zPos); |
| 279 |
< |
cout << "index: "<< (*parameters)[searchResult].zconsIndex |
| 280 |
< |
<<"\tzPos = " << (*parameters)[searchResult].zPos << endl; |
| 279 |
> |
// cout << "index: "<< (*parameters)[searchResult].zconsIndex |
| 280 |
> |
// <<"\tzPos = " << (*parameters)[searchResult].zPos << endl; |
| 281 |
|
kz.push_back((*parameters)[searchResult]. kRatio * zForceConst); |
| 282 |
|
|
| 283 |
|
molecules[i].getCOM(COM); |
| 536 |
|
#ifdef IS_MPI |
| 537 |
|
if(worldRank == 0){ |
| 538 |
|
#endif |
| 539 |
< |
std::cerr << "\n" |
| 540 |
< |
<< "*******************************************\n" |
| 541 |
< |
<< " about to call zeroOutVel()\n" |
| 542 |
< |
<< "*******************************************\n" |
| 543 |
< |
<< "\n"; |
| 539 |
> |
// std::cerr << "\n" |
| 540 |
> |
// << "*******************************************\n" |
| 541 |
> |
// << " about to call zeroOutVel()\n" |
| 542 |
> |
// << "*******************************************\n" |
| 543 |
> |
// << "\n"; |
| 544 |
|
#ifdef IS_MPI |
| 545 |
|
} |
| 546 |
|
#endif |
| 549 |
|
#ifdef IS_MPI |
| 550 |
|
if(worldRank == 0){ |
| 551 |
|
#endif |
| 552 |
< |
std::cerr << "\n" |
| 553 |
< |
<< "*******************************************\n" |
| 554 |
< |
<< " finished zeroOutVel()\n" |
| 555 |
< |
<< "*******************************************\n" |
| 556 |
< |
<< "\n"; |
| 552 |
> |
// std::cerr << "\n" |
| 553 |
> |
// << "*******************************************\n" |
| 554 |
> |
// << " finished zeroOutVel()\n" |
| 555 |
> |
// << "*******************************************\n" |
| 556 |
> |
// << "\n"; |
| 557 |
|
#ifdef IS_MPI |
| 558 |
|
} |
| 559 |
|
#endif |
| 566 |
|
#ifdef IS_MPI |
| 567 |
|
if(worldRank == 0){ |
| 568 |
|
#endif |
| 569 |
< |
cout << "---------------------------------------------------------------------" <<endl; |
| 570 |
< |
cout << "current time: " << info->getTime() << endl; |
| 571 |
< |
cout << "center of mass at z: " << zsys << endl; |
| 572 |
< |
cout << "before calcForce, the COMVel of system is " << zSysCOMVel <<endl; |
| 569 |
> |
// cout << "---------------------------------------------------------------------" <<endl; |
| 570 |
> |
// cout << "current time: " << info->getTime() << endl; |
| 571 |
> |
// cout << "center of mass at z: " << zsys << endl; |
| 572 |
> |
// cout << "before calcForce, the COMVel of system is " << zSysCOMVel <<endl; |
| 573 |
|
|
| 574 |
|
#ifdef IS_MPI |
| 575 |
|
} |
| 608 |
|
#ifdef IS_MPI |
| 609 |
|
if(worldRank == 0){ |
| 610 |
|
#endif |
| 611 |
< |
cout << "after calcForce, the COMVel of system is " << zSysCOMVel <<endl; |
| 611 |
> |
// cout << "after calcForce, the COMVel of system is " << zSysCOMVel <<endl; |
| 612 |
|
#ifdef IS_MPI |
| 613 |
|
} |
| 614 |
|
#endif |
| 708 |
|
#ifdef IS_MPI |
| 709 |
|
if(worldRank == 0){ |
| 710 |
|
#endif |
| 711 |
< |
cout << "before resetting the COMVel of sytem is " << zSysCOMVel << endl; |
| 711 |
> |
// cout << "before resetting the COMVel of sytem is " << zSysCOMVel << endl; |
| 712 |
|
#ifdef IS_MPI |
| 713 |
|
} |
| 714 |
|
#endif |
| 782 |
|
#ifdef IS_MPI |
| 783 |
|
if(worldRank == 0){ |
| 784 |
|
#endif |
| 785 |
< |
cout << "after resetting the COMVel of moving molecules is " << zSysCOMVel << endl; |
| 785 |
> |
// cout << "after resetting the COMVel of moving molecules is " << zSysCOMVel << endl; |
| 786 |
|
#ifdef IS_MPI |
| 787 |
|
} |
| 788 |
|
#endif |
| 942 |
|
|
| 943 |
|
if (states[i] == zcsMoving){ |
| 944 |
|
zconsMols[i]->getCOM(COM); |
| 945 |
< |
cout << "Moving Molecule\tindex: " << indexOfZConsMols[i] |
| 946 |
< |
<< "\tcurrent zpos: " << COM[whichDirection] << endl; |
| 945 |
> |
// cout << "Moving Molecule\tindex: " << indexOfZConsMols[i] |
| 946 |
> |
// << "\tcurrent zpos: " << COM[whichDirection] << endl; |
| 947 |
|
|
| 948 |
|
diff = COM[whichDirection] -zPos[i]; |
| 949 |
|
|
| 1207 |
|
#ifdef IS_MPI |
| 1208 |
|
if(worldRank == 0){ |
| 1209 |
|
#endif |
| 1210 |
< |
std::cerr << "\n" |
| 1211 |
< |
<< "*******************************************\n" |
| 1212 |
< |
<< " fiished Policy by numbr()\n" |
| 1213 |
< |
<< "*******************************************\n" |
| 1214 |
< |
<< "\n"; |
| 1210 |
> |
// std::cerr << "\n" |
| 1211 |
> |
// << "*******************************************\n" |
| 1212 |
> |
// << " fiished Policy by numbr()\n" |
| 1213 |
> |
// << "*******************************************\n" |
| 1214 |
> |
// << "\n"; |
| 1215 |
|
#ifdef IS_MPI |
| 1216 |
|
} |
| 1217 |
|
#endif |