| 6 | 
  | 
#include "ForceFields.hpp" | 
| 7 | 
  | 
#include "SimInfo.hpp" | 
| 8 | 
  | 
#include "ReadWrite.hpp" | 
| 9 | 
+ | 
#include "AllIntegrator.hpp" | 
| 10 | 
  | 
 | 
| 11 | 
  | 
// this routine is defined in BASS_interface.cpp | 
| 12 | 
  | 
extern void set_interface_stamps( MakeStamps* ms, Globals* g ); | 
| 18 | 
  | 
  ~SimSetup(); | 
| 19 | 
  | 
 | 
| 20 | 
  | 
  void setSimInfo( SimInfo* the_info ) { info = the_info; } | 
| 21 | 
+ | 
  void setSimInfo( SimInfo* the_info, int theNinfo ); | 
| 22 | 
  | 
  void parseFile( char* fileName ); | 
| 23 | 
  | 
  void createSim( void ); | 
| 24 | 
  | 
 | 
| 63 | 
  | 
  char* inFileName; | 
| 64 | 
  | 
 | 
| 65 | 
  | 
  SimInfo* info; | 
| 66 | 
+ | 
  int isInfoArray; | 
| 67 | 
+ | 
  int nInfo; | 
| 68 | 
  | 
 | 
| 69 | 
  | 
  int n_components; | 
| 70 | 
  | 
  int globalAtomIndex; | 
| 82 | 
  | 
  int tot_torsions; | 
| 83 | 
  | 
  int tot_SRI; | 
| 84 | 
  | 
 | 
| 81 | 
– | 
  Atom** the_atoms; | 
| 82 | 
– | 
  SRI** the_sris; | 
| 83 | 
– | 
  Exclude** the_excludes; | 
| 84 | 
– | 
  Molecule* the_molecules; | 
| 85 | 
  | 
  ForceFields* the_ff; | 
| 86 | 
  | 
 | 
| 87 | 
  | 
  // needed by makeElement | 
| 95 | 
  | 
  int* globalIndex; | 
| 96 | 
  | 
#endif //is_mpi | 
| 97 | 
  | 
 | 
| 98 | 
+ | 
  void setupZConstraint(void); | 
| 99 | 
+ | 
 | 
| 100 | 
  | 
}; | 
| 101 | 
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#endif |