| 19 | 
  | 
 | 
| 20 | 
  | 
  void setSimInfo( SimInfo* the_info ) { info = the_info; } | 
| 21 | 
  | 
  void setSimInfo( SimInfo* the_info, int theNinfo ); | 
| 22 | 
+ | 
  void suspendInit( void ) { initSuspend = true; }   | 
| 23 | 
  | 
  void parseFile( char* fileName ); | 
| 24 | 
  | 
  void createSim( void ); | 
| 25 | 
  | 
 | 
| 66 | 
  | 
  SimInfo* info; | 
| 67 | 
  | 
  int isInfoArray; | 
| 68 | 
  | 
  int nInfo; | 
| 69 | 
+ | 
   | 
| 70 | 
+ | 
  bool initSuspend; | 
| 71 | 
  | 
 | 
| 72 | 
  | 
  int n_components; | 
| 73 | 
  | 
  int globalAtomIndex; | 
| 85 | 
  | 
  int tot_torsions; | 
| 86 | 
  | 
  int tot_SRI; | 
| 87 | 
  | 
 | 
| 85 | 
– | 
  Atom** the_atoms; | 
| 86 | 
– | 
  SRI** the_sris; | 
| 87 | 
– | 
  Exclude** the_excludes; | 
| 88 | 
– | 
  Molecule* the_molecules; | 
| 88 | 
  | 
  ForceFields* the_ff; | 
| 89 | 
  | 
 | 
| 90 | 
  | 
  // needed by makeElement | 
| 98 | 
  | 
  int* globalIndex; | 
| 99 | 
  | 
#endif //is_mpi | 
| 100 | 
  | 
 | 
| 101 | 
< | 
  void setupZConstraint(void); | 
| 101 | 
> | 
  void setupZConstraint(SimInfo& theInfo);  //setup parameters for zconstraint method | 
| 102 | 
  | 
 | 
| 103 | 
  | 
}; | 
| 104 | 
  | 
#endif |