| 22 | 
  | 
#define NVT_ENS        1 | 
| 23 | 
  | 
#define NPTi_ENS       2 | 
| 24 | 
  | 
#define NPTf_ENS       3 | 
| 25 | 
– | 
#define NPTim_ENS      4 | 
| 26 | 
– | 
#define NPTfm_ENS      5 | 
| 25 | 
  | 
 | 
| 26 | 
  | 
#define FF_DUFF 0 | 
| 27 | 
  | 
#define FF_LJ   1 | 
| 601 | 
  | 
  } | 
| 602 | 
  | 
  else if (!strcasecmp(ensemble, "NPTf")){ | 
| 603 | 
  | 
    ensembleCase = NPTf_ENS; | 
| 606 | 
– | 
  } | 
| 607 | 
– | 
  else if (!strcasecmp(ensemble, "NPTim")){ | 
| 608 | 
– | 
    ensembleCase = NPTim_ENS; | 
| 609 | 
– | 
  } | 
| 610 | 
– | 
  else if (!strcasecmp(ensemble, "NPTfm")){ | 
| 611 | 
– | 
    ensembleCase = NPTfm_ENS; | 
| 604 | 
  | 
  } | 
| 605 | 
  | 
  else{ | 
| 606 | 
  | 
    sprintf(painCave.errMsg, | 
| 1340 | 
  | 
void SimSetup::makeIntegrator(void){ | 
| 1341 | 
  | 
  int k; | 
| 1342 | 
  | 
 | 
| 1343 | 
+ | 
  NVE<RealIntegrator>* myNVE = NULL; | 
| 1344 | 
  | 
  NVT<RealIntegrator>* myNVT = NULL; | 
| 1345 | 
  | 
  NPTi<NPT<RealIntegrator> >* myNPTi = NULL; | 
| 1346 | 
< | 
  NPTf<RealIntegrator>* myNPTf = NULL; | 
| 1354 | 
< | 
  NPTim<RealIntegrator>* myNPTim = NULL; | 
| 1355 | 
< | 
  NPTfm<RealIntegrator>* myNPTfm = NULL; | 
| 1346 | 
> | 
  NPTf<NPT<RealIntegrator> >* myNPTf = NULL; | 
| 1347 | 
  | 
   | 
| 1348 | 
  | 
  for (k = 0; k < nInfo; k++){ | 
| 1349 | 
  | 
    switch (ensembleCase){ | 
| 1350 | 
  | 
      case NVE_ENS: | 
| 1351 | 
  | 
        if (globals->haveZconstraints()){ | 
| 1352 | 
  | 
          setupZConstraint(info[k]); | 
| 1353 | 
< | 
          new ZConstraint<NVE<RealIntegrator> >(&(info[k]), the_ff); | 
| 1353 | 
> | 
          myNVE = new ZConstraint<NVE<RealIntegrator> >(&(info[k]), the_ff); | 
| 1354 | 
  | 
        } | 
| 1355 | 
< | 
        else | 
| 1356 | 
< | 
          new NVE<RealIntegrator>(&(info[k]), the_ff); | 
| 1355 | 
> | 
        else{ | 
| 1356 | 
> | 
          myNVE = new NVE<RealIntegrator>(&(info[k]), the_ff); | 
| 1357 | 
> | 
        } | 
| 1358 | 
> | 
         | 
| 1359 | 
> | 
        info->the_integrator = myNVE; | 
| 1360 | 
  | 
        break; | 
| 1361 | 
  | 
 | 
| 1362 | 
  | 
      case NVT_ENS: | 
| 1378 | 
  | 
          painCave.isFatal = 1; | 
| 1379 | 
  | 
          simError(); | 
| 1380 | 
  | 
        } | 
| 1381 | 
+ | 
 | 
| 1382 | 
+ | 
        info->the_integrator = myNVT; | 
| 1383 | 
  | 
        break; | 
| 1384 | 
  | 
 | 
| 1385 | 
  | 
      case NPTi_ENS: | 
| 1421 | 
  | 
          painCave.isFatal = 1; | 
| 1422 | 
  | 
          simError(); | 
| 1423 | 
  | 
        } | 
| 1424 | 
+ | 
 | 
| 1425 | 
+ | 
        info->the_integrator = myNPTi; | 
| 1426 | 
  | 
        break; | 
| 1427 | 
  | 
 | 
| 1428 | 
  | 
      case NPTf_ENS: | 
| 1429 | 
  | 
        if (globals->haveZconstraints()){ | 
| 1430 | 
  | 
          setupZConstraint(info[k]); | 
| 1431 | 
< | 
          myNPTf = new ZConstraint<NPTf<RealIntegrator> >(&(info[k]), the_ff); | 
| 1431 | 
> | 
          myNPTf = new ZConstraint<NPTf<NPT <RealIntegrator> > >(&(info[k]), the_ff); | 
| 1432 | 
  | 
        } | 
| 1433 | 
  | 
        else | 
| 1434 | 
< | 
          myNPTf = new NPTf<RealIntegrator>(&(info[k]), the_ff); | 
| 1434 | 
> | 
          myNPTf = new NPTf<NPT <RealIntegrator> >(&(info[k]), the_ff); | 
| 1435 | 
  | 
 | 
| 1436 | 
  | 
        myNPTf->setTargetTemp(globals->getTargetTemp()); | 
| 1437 | 
  | 
 | 
| 1457 | 
  | 
 | 
| 1458 | 
  | 
        if (globals->haveTauBarostat()) | 
| 1459 | 
  | 
          myNPTf->setTauBarostat(globals->getTauBarostat()); | 
| 1462 | 
– | 
        else{ | 
| 1463 | 
– | 
          sprintf(painCave.errMsg, | 
| 1464 | 
– | 
                  "SimSetup error: If you use an NPT\n" | 
| 1465 | 
– | 
                  "    ensemble, you must set tauBarostat.\n"); | 
| 1466 | 
– | 
          painCave.isFatal = 1; | 
| 1467 | 
– | 
          simError(); | 
| 1468 | 
– | 
        } | 
| 1469 | 
– | 
        break; | 
| 1470 | 
– | 
 | 
| 1471 | 
– | 
      case NPTim_ENS: | 
| 1472 | 
– | 
        if (globals->haveZconstraints()){ | 
| 1473 | 
– | 
          setupZConstraint(info[k]); | 
| 1474 | 
– | 
          myNPTim = new ZConstraint<NPTim<RealIntegrator> >(&(info[k]), the_ff); | 
| 1475 | 
– | 
        } | 
| 1476 | 
– | 
        else | 
| 1477 | 
– | 
          myNPTim = new NPTim<RealIntegrator>(&(info[k]), the_ff); | 
| 1478 | 
– | 
 | 
| 1479 | 
– | 
        myNPTim->setTargetTemp(globals->getTargetTemp()); | 
| 1480 | 
– | 
 | 
| 1481 | 
– | 
        if (globals->haveTargetPressure()) | 
| 1482 | 
– | 
          myNPTim->setTargetPressure(globals->getTargetPressure()); | 
| 1483 | 
– | 
        else{ | 
| 1484 | 
– | 
          sprintf(painCave.errMsg, | 
| 1485 | 
– | 
                  "SimSetup error: If you use a constant pressure\n" | 
| 1486 | 
– | 
                  "    ensemble, you must set targetPressure in the BASS file.\n"); | 
| 1487 | 
– | 
          painCave.isFatal = 1; | 
| 1488 | 
– | 
          simError(); | 
| 1489 | 
– | 
        } | 
| 1490 | 
– | 
 | 
| 1491 | 
– | 
        if (globals->haveTauThermostat()) | 
| 1492 | 
– | 
          myNPTim->setTauThermostat(globals->getTauThermostat()); | 
| 1460 | 
  | 
        else{ | 
| 1461 | 
  | 
          sprintf(painCave.errMsg, | 
| 1462 | 
  | 
                  "SimSetup error: If you use an NPT\n" | 
| 1496 | 
– | 
                  "    ensemble, you must set tauThermostat.\n"); | 
| 1497 | 
– | 
          painCave.isFatal = 1; | 
| 1498 | 
– | 
          simError(); | 
| 1499 | 
– | 
        } | 
| 1500 | 
– | 
 | 
| 1501 | 
– | 
        if (globals->haveTauBarostat()) | 
| 1502 | 
– | 
          myNPTim->setTauBarostat(globals->getTauBarostat()); | 
| 1503 | 
– | 
        else{ | 
| 1504 | 
– | 
          sprintf(painCave.errMsg, | 
| 1505 | 
– | 
                  "SimSetup error: If you use an NPT\n" | 
| 1463 | 
  | 
                  "    ensemble, you must set tauBarostat.\n"); | 
| 1464 | 
  | 
          painCave.isFatal = 1; | 
| 1465 | 
  | 
          simError(); | 
| 1466 | 
  | 
        } | 
| 1510 | 
– | 
        break; | 
| 1467 | 
  | 
 | 
| 1468 | 
< | 
      case NPTfm_ENS: | 
| 1513 | 
< | 
        if (globals->haveZconstraints()){ | 
| 1514 | 
< | 
          setupZConstraint(info[k]); | 
| 1515 | 
< | 
          myNPTfm = new ZConstraint<NPTfm<RealIntegrator> >(&(info[k]), the_ff); | 
| 1516 | 
< | 
        } | 
| 1517 | 
< | 
        else | 
| 1518 | 
< | 
          myNPTfm = new NPTfm<RealIntegrator>(&(info[k]), the_ff); | 
| 1519 | 
< | 
 | 
| 1520 | 
< | 
        myNPTfm->setTargetTemp(globals->getTargetTemp()); | 
| 1521 | 
< | 
 | 
| 1522 | 
< | 
        if (globals->haveTargetPressure()) | 
| 1523 | 
< | 
          myNPTfm->setTargetPressure(globals->getTargetPressure()); | 
| 1524 | 
< | 
        else{ | 
| 1525 | 
< | 
          sprintf(painCave.errMsg, | 
| 1526 | 
< | 
                  "SimSetup error: If you use a constant pressure\n" | 
| 1527 | 
< | 
                  "    ensemble, you must set targetPressure in the BASS file.\n"); | 
| 1528 | 
< | 
          painCave.isFatal = 1; | 
| 1529 | 
< | 
          simError(); | 
| 1530 | 
< | 
        } | 
| 1531 | 
< | 
 | 
| 1532 | 
< | 
        if (globals->haveTauThermostat()) | 
| 1533 | 
< | 
          myNPTfm->setTauThermostat(globals->getTauThermostat()); | 
| 1534 | 
< | 
        else{ | 
| 1535 | 
< | 
          sprintf(painCave.errMsg, | 
| 1536 | 
< | 
                  "SimSetup error: If you use an NPT\n" | 
| 1537 | 
< | 
                  "    ensemble, you must set tauThermostat.\n"); | 
| 1538 | 
< | 
          painCave.isFatal = 1; | 
| 1539 | 
< | 
          simError(); | 
| 1540 | 
< | 
        } | 
| 1541 | 
< | 
 | 
| 1542 | 
< | 
        if (globals->haveTauBarostat()) | 
| 1543 | 
< | 
          myNPTfm->setTauBarostat(globals->getTauBarostat()); | 
| 1544 | 
< | 
        else{ | 
| 1545 | 
< | 
          sprintf(painCave.errMsg, | 
| 1546 | 
< | 
                  "SimSetup error: If you use an NPT\n" | 
| 1547 | 
< | 
                  "    ensemble, you must set tauBarostat.\n"); | 
| 1548 | 
< | 
          painCave.isFatal = 1; | 
| 1549 | 
< | 
          simError(); | 
| 1550 | 
< | 
        } | 
| 1468 | 
> | 
        info->the_integrator = myNPTf; | 
| 1469 | 
  | 
        break; | 
| 1470 | 
  | 
 | 
| 1471 | 
  | 
      default: |