| 24 |
|
|
| 25 |
|
#define FF_DUFF 0 |
| 26 |
|
#define FF_LJ 1 |
| 27 |
+ |
#define FF_EAM 2 |
| 28 |
|
|
| 28 |
– |
|
| 29 |
|
SimSetup::SimSetup(){ |
| 30 |
|
stamps = new MakeStamps(); |
| 31 |
|
globals = new Globals(); |
| 586 |
|
|
| 587 |
|
if( !strcasecmp( force_field, "DUFF" )) ffCase = FF_DUFF; |
| 588 |
|
else if( !strcasecmp( force_field, "LJ" )) ffCase = FF_LJ; |
| 589 |
+ |
else if( !strcasecmp( force_field, "EAM" )) ffCase = FF_EAM; |
| 590 |
|
else{ |
| 591 |
|
sprintf( painCave.errMsg, |
| 592 |
|
"SimSetup Error. Unrecognized force field -> %s\n", |
| 863 |
|
#ifdef IS_MPI |
| 864 |
|
}else fileInit = new InitializeFromFile( NULL ); |
| 865 |
|
#endif |
| 866 |
< |
fileInit->read_xyz( info ); // default velocities on |
| 866 |
> |
fileInit->readInit( info ); // default velocities on |
| 867 |
|
|
| 868 |
|
delete fileInit; |
| 869 |
|
} |
| 1033 |
|
the_ff = new LJFF(); |
| 1034 |
|
break; |
| 1035 |
|
|
| 1036 |
+ |
case FF_EAM: |
| 1037 |
+ |
the_ff = new EAM_FF(); |
| 1038 |
+ |
break; |
| 1039 |
+ |
|
| 1040 |
|
default: |
| 1041 |
|
sprintf( painCave.errMsg, |
| 1042 |
|
"SimSetup Error. Unrecognized force field in case statement.\n"); |
| 1286 |
|
|
| 1287 |
|
void SimSetup::makeIntegrator( void ){ |
| 1288 |
|
|
| 1289 |
< |
NVT* myNVT = NULL; |
| 1290 |
< |
NPTi* myNPTi = NULL; |
| 1291 |
< |
NPTf* myNPTf = NULL; |
| 1292 |
< |
NPTim* myNPTim = NULL; |
| 1293 |
< |
NPTfm* myNPTfm = NULL; |
| 1289 |
> |
NVT<RealIntegrator>* myNVT = NULL; |
| 1290 |
> |
NPTi<RealIntegrator>* myNPTi = NULL; |
| 1291 |
> |
NPTf<RealIntegrator>* myNPTf = NULL; |
| 1292 |
> |
NPTim<RealIntegrator>* myNPTim = NULL; |
| 1293 |
> |
NPTfm<RealIntegrator>* myNPTfm = NULL; |
| 1294 |
|
|
| 1295 |
|
switch( ensembleCase ){ |
| 1296 |
|
|
| 1297 |
|
case NVE_ENS: |
| 1298 |
< |
new NVE( info, the_ff ); |
| 1298 |
> |
new NVE<RealIntegrator>( info, the_ff ); |
| 1299 |
|
break; |
| 1300 |
|
|
| 1301 |
|
case NVT_ENS: |
| 1302 |
< |
myNVT = new NVT( info, the_ff ); |
| 1302 |
> |
myNVT = new NVT<RealIntegrator>( info, the_ff ); |
| 1303 |
|
myNVT->setTargetTemp(globals->getTargetTemp()); |
| 1304 |
|
|
| 1305 |
|
if (globals->haveTauThermostat()) |
| 1315 |
|
break; |
| 1316 |
|
|
| 1317 |
|
case NPTi_ENS: |
| 1318 |
< |
myNPTi = new NPTi( info, the_ff ); |
| 1318 |
> |
myNPTi = new NPTi<RealIntegrator>( info, the_ff ); |
| 1319 |
|
myNPTi->setTargetTemp( globals->getTargetTemp() ); |
| 1320 |
|
|
| 1321 |
|
if (globals->haveTargetPressure()) |
| 1350 |
|
break; |
| 1351 |
|
|
| 1352 |
|
case NPTf_ENS: |
| 1353 |
< |
myNPTf = new NPTf( info, the_ff ); |
| 1353 |
> |
myNPTf = new NPTf<RealIntegrator>( info, the_ff ); |
| 1354 |
|
myNPTf->setTargetTemp( globals->getTargetTemp()); |
| 1355 |
|
|
| 1356 |
|
if (globals->haveTargetPressure()) |
| 1385 |
|
break; |
| 1386 |
|
|
| 1387 |
|
case NPTim_ENS: |
| 1388 |
< |
myNPTim = new NPTim( info, the_ff ); |
| 1388 |
> |
myNPTim = new NPTim<RealIntegrator>( info, the_ff ); |
| 1389 |
|
myNPTim->setTargetTemp( globals->getTargetTemp()); |
| 1390 |
|
|
| 1391 |
|
if (globals->haveTargetPressure()) |
| 1420 |
|
break; |
| 1421 |
|
|
| 1422 |
|
case NPTfm_ENS: |
| 1423 |
< |
myNPTfm = new NPTfm( info, the_ff ); |
| 1423 |
> |
myNPTfm = new NPTfm<RealIntegrator>( info, the_ff ); |
| 1424 |
|
myNPTfm->setTargetTemp( globals->getTargetTemp()); |
| 1425 |
|
|
| 1426 |
|
if (globals->haveTargetPressure()) |