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root/group/branches/new-templateless/OOPSE/libmdtools/SimInfo.cpp
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Comparing branches/new-templateless/OOPSE/libmdtools/SimInfo.cpp (file contents):
Revision 848, Fri Oct 31 18:28:53 2003 UTC vs.
Revision 852 by mmeineke, Thu Nov 6 18:20:47 2003 UTC

# Line 61 | Line 61 | SimInfo::SimInfo(){
61  
62    myConfiguration = new SimState();
63  
64 +  properties = new GenericData();
65 +
66    wrapMeSimInfo( this );
67   }
68  
# Line 68 | Line 70 | SimInfo::~SimInfo(){
70   SimInfo::~SimInfo(){
71  
72    delete myConfiguration;
73 <
72 <  map<string, GenericData*>::iterator i;
73 <  
74 <  for(i = properties.begin(); i != properties.end(); i++)
75 <    delete (*i).second;
76 <    
73 >  delete properties;    
74   }
75  
76   void SimInfo::setBox(double newBox[3]) {
# Line 145 | Line 142 | void SimInfo::calcHmatInv( void ) {
142   }
143  
144   void SimInfo::calcHmatInv( void ) {
145 <  
145 >
146 >  int oldOrtho;
147    int i,j;
148    double smallDiag;
149    double tol;
# Line 155 | Line 153 | void SimInfo::calcHmatInv( void ) {
153  
154    // Check the inverse to make sure it is sane:
155  
156 <  matMul3( Hmat, HmatInv, sanity );
156 >  // matMul3( Hmat, HmatInv, sanity );
157      
158    // check to see if Hmat is orthorhombic
159 +
160    
161 <  smallDiag = Hmat[0][0];
162 <  if(smallDiag > Hmat[1][1]) smallDiag = Hmat[1][1];
163 <  if(smallDiag > Hmat[2][2]) smallDiag = Hmat[2][2];
161 >  oldOrtho = orthoRhombic;
162 >
163 >  smallDiag = fabs(Hmat[0][0]);
164 >  if(smallDiag > fabs(Hmat[1][1])) smallDiag = fabs(Hmat[1][1]);
165 >  if(smallDiag > fabs(Hmat[2][2])) smallDiag = fabs(Hmat[2][2]);
166    tol = smallDiag * 1E-6;
167  
168    orthoRhombic = 1;
# Line 170 | Line 171 | void SimInfo::calcHmatInv( void ) {
171      for (j = 0 ; j < 3; j++) {
172        if (i != j) {
173          if (orthoRhombic) {
174 <          if (Hmat[i][j] >= tol) orthoRhombic = 0;
174 >          if ( fabs(Hmat[i][j]) >= tol) orthoRhombic = 0;
175          }        
176        }
177      }
178    }
179 +  
180 +  if( oldOrtho != orthoRhombic ){
181 +    
182 +    if( orthoRhombic ){
183 +      sprintf( painCave.errMsg,
184 +               "Hmat is switching from Non-Orthorhombic to OrthoRhombic\n"
185 +               "       If this is a bad thing change the ortho tolerance in SimInfo.\n" );
186 +      simError();
187 +    }
188 +    else {
189 +      sprintf( painCave.errMsg,
190 +               "Hmat is switching from Orthorhombic to Non-OrthoRhombic\n"
191 +               "       If this is a bad thing change the ortho tolerance in SimInfo.\n" );
192 +      simError();
193 +    }
194 +  }
195   }
196  
197   double SimInfo::matDet3(double a[3][3]) {
# Line 643 | Line 660 | void SimInfo::checkCutOffs( void ){
660    
661   }
662  
663 < void SimInfo::addProperty(GenericData* prop){
663 > GenericData* SimInfo::getProperty(char* propName){
664  
665 <  map<string, GenericData*>::iterator result;
649 <  result = properties.find(prop->getID());
650 <  
651 <  //we can't simply use  properties[prop->getID()] = prop,
652 <  //it will cause memory leak if we already contain a propery which has the same name of prop
653 <  
654 <  if(result != properties.end()){
655 <    
656 <    delete (*result).second;
657 <    (*result).second = prop;
658 <      
659 <  }
660 <  else{
661 <
662 <    properties[prop->getID()] = prop;
663 <
664 <  }
665 <    
665 >  return properties->find( propName );
666   }
667  
668 GenericData* SimInfo::getProperty(const string& propName){
669
670  map<string, GenericData*>::iterator result;
671  
672  //string lowerCaseName = ();
673  
674  result = properties.find(propName);
675  
676  if(result != properties.end())
677    return (*result).second;  
678  else  
679    return NULL;  
680 }
681
682 vector<GenericData*> SimInfo::getProperties(){
683
684  vector<GenericData*> result;
685  map<string, GenericData*>::iterator i;
686  
687  for(i = properties.begin(); i != properties.end(); i++)
688    result.push_back((*i).second);
689    
690  return result;
691 }
692
668   double SimInfo::matTrace3(double m[3][3]){
669    double trace;
670    trace = m[0][0] + m[1][1] + m[2][2];

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