started work on template removal.
This commit was manufactured by cvs2svn to create branch 'new-templateless'.
added template stuff to the Maikefile template little changes to some printf format statements
add chi and eta to the comment line of dump file.
replace c++ header stuff with more portable c header stuff Also, mod file fixes and portability changes Some fortran changes will need to be reversed.
cleaned things with gcc -Wall and g++ -Wall
Removed NPTfm from Integrator.hpp. Some small syntax cleaning in NPTfm and SimSetup
Converted NPTf to work with the NPT base class. Removed NPTfm and NPTim from cvs
added NPT base class. NPTi is up to date. NPTf is not.
fixed bugs in NPTf, found (nearly) conserved quantities for both NPTi and NPTf
fixed ecr grow in SimInfo fixed conserved quantity in NPT (Still some small bug) NPTi appears very stable.
add conserved quantity to statWriter fix bug of vector wrapping at NPTi
added resetTime to the Global namespace. added ability to reset the integrators in the NVT and NPT family.
Added Z constraint.
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Fixes for the NPT ensembles
Fixes for get and set routines in Atom and DirectionalAtom
fixed some bugs
Bunch of 1-d array -> 2-d array stuff
Bug fixing NPTi and NPTf. there is some error in the caclulation of HmatInverse.
Fixes and merging NPTf
Fixes for both NPTf and NPTi
Fixes in NPTi migrated into NPTf
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