ViewVC Help
| View Changeset | Root Listing
root/OpenMD
Jump to revision: Previous Next
Author: gezelter
Date: Fri Sep 24 04:16:43 2004 UTC (20 years, 10 months ago)
Log Message:
Import of OOPSE v. 2.0

Changed paths

Show only first 100 changes...
Path Details
Directorytrunk/AUTHORS added
Directorytrunk/ChangeLog added
Directorytrunk/LICENSE added
Directorytrunk/Makefile added
Directorytrunk/README added
Directorytrunk/ac-tools/ added
Directorytrunk/ac-tools/Make.conf.in added
Directorytrunk/ac-tools/aclocal.m4 added
Directorytrunk/ac-tools/config.guess added
Directorytrunk/ac-tools/config.sub added
Directorytrunk/ac-tools/configure.in added
Directorytrunk/ac-tools/fortran90.m4 added
Directorytrunk/ac-tools/install-sh added
Directorytrunk/ac-tools/shtool added
Directorytrunk/configure added
Directorytrunk/doc/ added
Directorytrunk/doc/OOPSE.pdf added
Directorytrunk/forceFields/ added
Directorytrunk/forceFields/Ag.VC.funcfl added
Directorytrunk/forceFields/Ag.u3.funcfl added
Directorytrunk/forceFields/Ag.u6.funcfl added
Directorytrunk/forceFields/Al.VC.funcfl added
Directorytrunk/forceFields/Au.VC.funcfl added
Directorytrunk/forceFields/Au.u3.funcfl added
Directorytrunk/forceFields/Au.u6.funcfl added
Directorytrunk/forceFields/Cu.VC.funcfl added
Directorytrunk/forceFields/Cu.u3.funcfl added
Directorytrunk/forceFields/Cu.u6.funcfl added
Directorytrunk/forceFields/DUFF.frc added
Directorytrunk/forceFields/DipoleTest.frc added
Directorytrunk/forceFields/EAM.VC.frc added
Directorytrunk/forceFields/EAM.frc added
Directorytrunk/forceFields/EAM.u3.frc added
Directorytrunk/forceFields/EAM.u6.frc added
Directorytrunk/forceFields/LJFF.frc added
Directorytrunk/forceFields/Makefile.in added
Directorytrunk/forceFields/Ni.VC.funcfl added
Directorytrunk/forceFields/Ni.u3.funcfl added
Directorytrunk/forceFields/Ni.u6.funcfl added
Directorytrunk/forceFields/Pd.VC.funcfl added
Directorytrunk/forceFields/Pd.u3.funcfl added
Directorytrunk/forceFields/Pd.u6.funcfl added
Directorytrunk/forceFields/Pt.VC.funcfl added
Directorytrunk/forceFields/Pt.u3.funcfl added
Directorytrunk/forceFields/Pt.u6.funcfl added
Directorytrunk/forceFields/WATER.frc added
Directorytrunk/make/ added
Directorytrunk/make/Makefile added
Directorytrunk/make/_files/ added
Directorytrunk/make/_files/style.css added
Directorytrunk/samples/ added
Directorytrunk/samples/Makefile.in added
Directorytrunk/samples/alkane/ added
Directorytrunk/samples/alkane/Makefile.in added
Directorytrunk/samples/alkane/alkanes.md added
Directorytrunk/samples/alkane/butane.in added
Directorytrunk/samples/alkane/butane.md added
Directorytrunk/samples/argon/ added
Directorytrunk/samples/argon/500.in added
Directorytrunk/samples/argon/500.md added
Directorytrunk/samples/argon/Makefile.in added
Directorytrunk/samples/argon/ar864.in added
Directorytrunk/samples/argon/ar864.md added
Directorytrunk/samples/argon/argonNVT.in added
Directorytrunk/samples/argon/argonNVT.md added
Directorytrunk/samples/argon/lj.md added
Directorytrunk/samples/lipid/ added
Directorytrunk/samples/lipid/5x5.in added
Directorytrunk/samples/lipid/5x5.md added
Directorytrunk/samples/lipid/Makefile.in added
Directorytrunk/samples/lipid/lipid.md added
Directorytrunk/samples/lipid/water.md added
Directorytrunk/samples/metals/ added
Directorytrunk/samples/metals/Au-Core-Ag-Shell_Nanoparticle.in added
Directorytrunk/samples/metals/Au-Core-Ag-Shell_Nanoparticle.md added
Directorytrunk/samples/metals/Au_bulk.in added
Directorytrunk/samples/metals/Au_bulk_FBD.md added
Directorytrunk/samples/metals/Au_bulk_voter.md added
Directorytrunk/samples/metals/Au_nanoparticle.in added
Directorytrunk/samples/metals/Au_nanoparticle.md added
Directorytrunk/samples/metals/Makefile.in added
Directorytrunk/samples/metals/metals.md added
Directorytrunk/samples/minimizer/ added
Directorytrunk/samples/minimizer/Makefile.in added
Directorytrunk/samples/minimizer/WATER.frc added
Directorytrunk/samples/minimizer/ssdEM.in added
Directorytrunk/samples/minimizer/ssdEM.md added
Directorytrunk/samples/minimizer/tip4p_two.in added
Directorytrunk/samples/minimizer/tip4p_two.md added
Directorytrunk/samples/minimizer/water.md added
Directorytrunk/samples/water/ added
Directorytrunk/samples/water/Makefile.in added
Directorytrunk/samples/water/dimer/ added
Directorytrunk/samples/water/dimer/Makefile.in added
Directorytrunk/samples/water/dimer/two.in added
Directorytrunk/samples/water/dimer/two.md added
Directorytrunk/samples/water/dimer/water.md added
Directorytrunk/samples/water/spce/ added
Directorytrunk/samples/water/spce/Makefile.in added
Directorytrunk/samples/water/spce/spce.in added
Directorytrunk/samples/water/spce/spce.md added
Directorytrunk/samples/water/spce/water.md added
Directorytrunk/samples/water/ssd/ added
Directorytrunk/samples/water/ssd/Makefile.in added
Directorytrunk/samples/water/ssd/ssd.in added
Directorytrunk/samples/water/ssd/ssd.md added
Directorytrunk/samples/water/ssd/water.md added
Directorytrunk/samples/water/ssde/ added
Directorytrunk/samples/water/ssde/Makefile.in added
Directorytrunk/samples/water/ssde/ssde.in added
Directorytrunk/samples/water/ssde/ssde.md added
Directorytrunk/samples/water/ssde/water.md added
Directorytrunk/samples/water/tip3p_ice/ added
Directorytrunk/samples/water/tip3p_ice/Makefile.in added
Directorytrunk/samples/water/tip3p_ice/tp3.in added
Directorytrunk/samples/water/tip3p_ice/tp3.md added
Directorytrunk/samples/water/tip3p_ice/water.md added
Directorytrunk/samples/water/tip4p/ added
Directorytrunk/samples/water/tip4p/Makefile.in added
Directorytrunk/samples/water/tip4p/tp4.in added
Directorytrunk/samples/water/tip4p/tp4.md added
Directorytrunk/samples/water/tip4p/water.md added
Directorytrunk/samples/zcons/ added
Directorytrunk/samples/zcons/Makefile.in added
Directorytrunk/samples/zcons/water.md added
Directorytrunk/samples/zcons/zconsFixed.in added
Directorytrunk/samples/zcons/zconsFixed.md added
Directorytrunk/samples/zcons/zconsMoving.in added
Directorytrunk/samples/zcons/zconsMoving.md added
Directorytrunk/scripts/ added
Directorytrunk/scripts/cleanSrc added
Directorytrunk/scripts/cvs2cl.pl added
Directorytrunk/scripts/makers added
Directorytrunk/scripts/sfmakedepend added
Directorytrunk/src/ added
Directorytrunk/src/Makefile added
Directorytrunk/src/UseTheForce/ added
Directorytrunk/src/UseTheForce/DUFF.cpp added
Directorytrunk/src/UseTheForce/DarkSide/ added
Directorytrunk/src/UseTheForce/DarkSide/Makefile added
Directorytrunk/src/UseTheForce/DarkSide/atype_module.F90 added
Directorytrunk/src/UseTheForce/DarkSide/calc_LJ_FF.F90 added
Directorytrunk/src/UseTheForce/DarkSide/calc_charge_charge.F90 added
Directorytrunk/src/UseTheForce/DarkSide/calc_dipole_dipole.F90 added
Directorytrunk/src/UseTheForce/DarkSide/calc_eam.F90 added
Directorytrunk/src/UseTheForce/DarkSide/calc_gb.F90 added
Directorytrunk/src/UseTheForce/DarkSide/calc_reaction_field.F90 added
Directorytrunk/src/UseTheForce/DarkSide/calc_sticky_pair.F90 added
Directorytrunk/src/UseTheForce/DarkSide/force_globals.F90 added
Directorytrunk/src/UseTheForce/DarkSide/neighborLists.F90 added
Directorytrunk/src/UseTheForce/DarkSide/notifyCutoffs.F90 added
Directorytrunk/src/UseTheForce/DarkSide/switch_module.F90 added
Directorytrunk/src/UseTheForce/EAM_FF.cpp added
Directorytrunk/src/UseTheForce/ForceFields.cpp added
Directorytrunk/src/UseTheForce/ForceFields.hpp added
Directorytrunk/src/UseTheForce/LJFF.cpp added
Directorytrunk/src/UseTheForce/Makefile added
Directorytrunk/src/UseTheForce/WATER.cpp added
Directorytrunk/src/UseTheForce/do_Forces.F90 added
Directorytrunk/src/UseTheForce/fForceField.h added
Directorytrunk/src/UseTheForce/fSwitchingFunction.h added
Directorytrunk/src/UseTheForce/fortranWrapDefines.hpp added
Directorytrunk/src/UseTheForce/fortranWrappers.cpp added
Directorytrunk/src/UseTheForce/fortranWrappers.hpp added
Directorytrunk/src/UseTheForce/mpiComponentPlan.h added
Directorytrunk/src/UseTheForce/mpiForceField.c added
Directorytrunk/src/UseTheForce/mpiForceField.h added
Directorytrunk/src/UseTheForce/mpiSimulation_module.F90 added
Directorytrunk/src/UseTheForce/wrappers.F90 added
Directorytrunk/src/applications/ added
Directorytrunk/src/applications/BaseLattice.cpp added
Directorytrunk/src/applications/BaseLattice.hpp added
Directorytrunk/src/applications/Dump2XYZ.cpp added
Directorytrunk/src/applications/Dump2XYZ.ggo added
Directorytrunk/src/applications/Dump2XYZCmd.c added
Directorytrunk/src/applications/Dump2XYZCmd.h added
Directorytrunk/src/applications/Lattice.cpp added
Directorytrunk/src/applications/Lattice.hpp added
Directorytrunk/src/applications/LatticeCreator.cpp added
Directorytrunk/src/applications/LatticeCreator.hpp added
Directorytrunk/src/applications/LatticeFactory.cpp added
Directorytrunk/src/applications/LatticeFactory.hpp added
Directorytrunk/src/applications/Makedepend added
Directorytrunk/src/applications/Makefile added
Directorytrunk/src/applications/MoLocator.cpp added
Directorytrunk/src/applications/MoLocator.hpp added
Directorytrunk/src/applications/Vector3d.hpp added
Directorytrunk/src/applications/cmdline.c added
Directorytrunk/src/applications/cmdline.h added
Directorytrunk/src/applications/getopt.c added
Directorytrunk/src/applications/getopt1.c added
Directorytrunk/src/applications/gnugetopt.h added
Directorytrunk/src/applications/nanoBuilder.cpp added
Directorytrunk/src/applications/nanoBuilder.hpp added
Directorytrunk/src/applications/oopse.cpp added
Directorytrunk/src/applications/quickLate.c added
Directorytrunk/src/applications/simpleBuilder.cpp added
Directorytrunk/src/applications/simpleBuilder.ggo added
Directorytrunk/src/applications/simpleBuilderCmd.c added
Directorytrunk/src/applications/simpleBuilderCmd.h added
Directorytrunk/src/brains/ added
Directorytrunk/src/brains/Exclude.cpp added
Directorytrunk/src/brains/Exclude.hpp added
Directorytrunk/src/brains/ForceFields.cpp added
Directorytrunk/src/brains/Makedepend added
Directorytrunk/src/brains/Makefile added
Directorytrunk/src/brains/SimInfo.cpp added
Directorytrunk/src/brains/SimInfo.hpp added
Directorytrunk/src/brains/SimSetup.cpp added
Directorytrunk/src/brains/SimSetup.hpp added
Directorytrunk/src/brains/SimState.cpp added
Directorytrunk/src/brains/SimState.hpp added
Directorytrunk/src/brains/SkipList.cpp added
Directorytrunk/src/brains/SkipList.hpp added
Directorytrunk/src/brains/Thermo.cpp added
Directorytrunk/src/brains/Thermo.hpp added
Directorytrunk/src/brains/fSimulation.h added
Directorytrunk/src/brains/mpiSimulation.cpp added
Directorytrunk/src/brains/mpiSimulation.hpp added
Directorytrunk/src/brains/simulation_module.F90 added
Directorytrunk/src/config.h.in added
Directorytrunk/src/constraints/ added
Directorytrunk/src/constraints/AbstractClasses.hpp added
Directorytrunk/src/constraints/Makefile added
Directorytrunk/src/constraints/ZConstraint.cpp added
Directorytrunk/src/integrators/ added
Directorytrunk/src/integrators/AbstractClasses.hpp added
Directorytrunk/src/integrators/AllIntegrator.hpp added
Directorytrunk/src/integrators/Integrator.cpp added
Directorytrunk/src/integrators/Integrator.hpp added
Directorytrunk/src/integrators/Makefile added
Directorytrunk/src/integrators/NPT.cpp added
Directorytrunk/src/integrators/NPTf.cpp added
Directorytrunk/src/integrators/NPTi.cpp added
Directorytrunk/src/integrators/NPTxyz.cpp added
Directorytrunk/src/integrators/NVT.cpp added
Directorytrunk/src/io/ added
Directorytrunk/src/io/BASS_interface.cpp added
Directorytrunk/src/io/BASS_interface.h added
Directorytrunk/src/io/BASS_parse.c added
Directorytrunk/src/io/BASS_parse.h added
Directorytrunk/src/io/BASSlex.l added
Directorytrunk/src/io/BASSyacc.y added
Directorytrunk/src/io/DumpReader.cpp added
Directorytrunk/src/io/DumpWriter.cpp added
Directorytrunk/src/io/Globals.cpp added
Directorytrunk/src/io/Globals.hpp added
Directorytrunk/src/io/InitializeFromFile.cpp added
Directorytrunk/src/io/LinkedAssign.cpp added
Directorytrunk/src/io/LinkedAssign.hpp added
Directorytrunk/src/io/LinkedCommand.cpp added
Directorytrunk/src/io/LinkedCommand.hpp added
Directorytrunk/src/io/Makefile added
Directorytrunk/src/io/ReadWrite.hpp added
Directorytrunk/src/io/StatWriter.cpp added
Directorytrunk/src/io/ZConsReader.cpp added
Directorytrunk/src/io/ZConsReader.hpp added
Directorytrunk/src/io/ZConsWriter.cpp added
Directorytrunk/src/io/ZConsWriter.hpp added
Directorytrunk/src/io/interface.c added
Directorytrunk/src/io/make_nodes.c added
Directorytrunk/src/io/make_nodes.h added
Directorytrunk/src/io/mpiBASS.c added
Directorytrunk/src/io/mpiBASS.h added
Directorytrunk/src/io/node_list.h added
Directorytrunk/src/io/parse_interface.h added
Directorytrunk/src/io/parse_me.h added
Directorytrunk/src/io/parse_tree.c added
Directorytrunk/src/io/parse_tree.h added
Directorytrunk/src/math/ added
Directorytrunk/src/math/Euler3.cpp added
Directorytrunk/src/math/Euler3.hpp added
Directorytrunk/src/math/Makefile added
Directorytrunk/src/math/MatVec3.c added
Directorytrunk/src/math/MatVec3.h added
Directorytrunk/src/math/mt19937ar.c added
Directorytrunk/src/math/randomSPRNG.cpp added
Directorytrunk/src/math/randomSPRNG.hpp added
Directorytrunk/src/minimizers/ added
Directorytrunk/src/minimizers/CGFamilyMinimizer.cpp added
Directorytrunk/src/minimizers/Makefile added
Directorytrunk/src/minimizers/MinimizerParameterSet.hpp added
Directorytrunk/src/minimizers/OOPSEMinimizer.cpp added
Directorytrunk/src/minimizers/OOPSEMinimizer.hpp added
Directorytrunk/src/minimizers/PRCG.cpp added
Directorytrunk/src/minimizers/SDMinimizer.cpp added
Directorytrunk/src/primitives/ added
Directorytrunk/src/primitives/AbstractClasses.hpp added
Directorytrunk/src/primitives/Atom.cpp added
Directorytrunk/src/primitives/Atom.hpp added
Directorytrunk/src/primitives/Bend.cpp added
Directorytrunk/src/primitives/BendExtensions.cpp added
Directorytrunk/src/primitives/Bond.cpp added
Directorytrunk/src/primitives/BondExtensions.cpp added
Directorytrunk/src/primitives/CutoffGroup.hpp added
Directorytrunk/src/primitives/DirectionalAtom.cpp added
Directorytrunk/src/primitives/DirectionalAtom.hpp added
Directorytrunk/src/primitives/GhostBend.cpp added
Directorytrunk/src/primitives/Makefile added
Directorytrunk/src/primitives/Molecule.cpp added
Directorytrunk/src/primitives/Molecule.hpp added
Directorytrunk/src/primitives/RigidBody.cpp added
Directorytrunk/src/primitives/RigidBody.hpp added
Directorytrunk/src/primitives/SRI.hpp added
Directorytrunk/src/primitives/StuntDouble.cpp added
Directorytrunk/src/primitives/StuntDouble.hpp added
Directorytrunk/src/primitives/Torsion.cpp added
Directorytrunk/src/primitives/TorsionExtensions.cpp added
Directorytrunk/src/profiling/ added
Directorytrunk/src/profiling/Makefile added
Directorytrunk/src/profiling/mdProfile.cpp added
Directorytrunk/src/profiling/mdProfile.hpp added
Directorytrunk/src/profiling/timing.F90 added
Directorytrunk/src/restraints/ added
Directorytrunk/src/restraints/Makefile added
Directorytrunk/src/restraints/Restraints.cpp added
Directorytrunk/src/restraints/Restraints.hpp added
Directorytrunk/src/types/ added
Directorytrunk/src/types/AtomStamp.cpp added
Directorytrunk/src/types/AtomStamp.hpp added
Directorytrunk/src/types/BendStamp.cpp added
Directorytrunk/src/types/BendStamp.hpp added
Directorytrunk/src/types/BondStamp.cpp added
Directorytrunk/src/types/BondStamp.hpp added
Directorytrunk/src/types/Component.cpp added
Directorytrunk/src/types/Component.hpp added
Directorytrunk/src/types/CutoffGroupStamp.cpp added
Directorytrunk/src/types/CutoffGroupStamp.hpp added
Directorytrunk/src/types/MakeStamps.cpp added
Directorytrunk/src/types/MakeStamps.hpp added
Directorytrunk/src/types/Makefile added
Directorytrunk/src/types/MoleculeStamp.cpp added
Directorytrunk/src/types/MoleculeStamp.hpp added
Directorytrunk/src/types/RigidBodyStamp.cpp added
Directorytrunk/src/types/RigidBodyStamp.hpp added
Directorytrunk/src/types/TorsionStamp.cpp added
Directorytrunk/src/types/TorsionStamp.hpp added
Directorytrunk/src/types/ZconStamp.cpp added
Directorytrunk/src/types/ZconStamp.hpp added
Directorytrunk/src/utils/ added
Directorytrunk/src/utils/GenericData.cpp added
Directorytrunk/src/utils/GenericData.hpp added
Directorytrunk/src/utils/Makefile added
Directorytrunk/src/utils/StreamTokenizer.cpp added
Directorytrunk/src/utils/StreamTokenizer.hpp added
Directorytrunk/src/utils/StringUtils.c added
Directorytrunk/src/utils/StringUtils.cpp added
Directorytrunk/src/utils/StringUtils.h added
Directorytrunk/src/utils/StringUtils.hpp added
Directorytrunk/src/utils/TypeInfo.hpp added
Directorytrunk/src/utils/Utility.cpp added
Directorytrunk/src/utils/Utility.hpp added
Directorytrunk/src/utils/definitions_module.F90 added
Directorytrunk/src/utils/fError.c added
Directorytrunk/src/utils/oopseMPI_module.F90 added
Directorytrunk/src/utils/simError.c added
Directorytrunk/src/utils/simError.h added
Directorytrunk/src/utils/status_module.F90 added
Directorytrunk/src/utils/vector_class.F90 added
Directorytrunk/src/visitors/ added
Directorytrunk/src/visitors/AtomVisitor.cpp added
Directorytrunk/src/visitors/AtomVisitor.hpp added
Directorytrunk/src/visitors/BaseVisitor.hpp added
Directorytrunk/src/visitors/CompositeVisitor.cpp added
Directorytrunk/src/visitors/CompositeVisitor.hpp added
Directorytrunk/src/visitors/Makefile added
Directorytrunk/src/visitors/OtherVisitor.cpp added
Directorytrunk/src/visitors/OtherVisitor.hpp added
Directorytrunk/src/visitors/RigidBodyVisitor.cpp added
Directorytrunk/src/visitors/RigidBodyVisitor.hpp added
Directorytrunk/src/visitors/ZconsVisitor.cpp added
Directorytrunk/src/visitors/ZconsVisitor.hpp added