Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
spell check
add getArray function to RectMatrix and Vector classes
Snapshot and SnapshotManager in progress
more bugs get fixed at math library
more bugs are fixed in Vector class
fix some bugs in RectMatrixTestCase
implement more test cases
adding more testing units
adding Makefile
add SquareMatrixTestCase class
adding testing unit
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