1 |
< |
/* |
1 |
> |
/* |
2 |
|
* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
3 |
|
* |
4 |
|
* The University of Notre Dame grants you ("Licensee") a |
6 |
|
* redistribute this software in source and binary code form, provided |
7 |
|
* that the following conditions are met: |
8 |
|
* |
9 |
< |
* 1. Acknowledgement of the program authors must be made in any |
10 |
< |
* publication of scientific results based in part on use of the |
11 |
< |
* program. An acceptable form of acknowledgement is citation of |
12 |
< |
* the article in which the program was described (Matthew |
13 |
< |
* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
14 |
< |
* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
15 |
< |
* Parallel Simulation Engine for Molecular Dynamics," |
16 |
< |
* J. Comput. Chem. 26, pp. 252-271 (2005)) |
17 |
< |
* |
18 |
< |
* 2. Redistributions of source code must retain the above copyright |
9 |
> |
* 1. Redistributions of source code must retain the above copyright |
10 |
|
* notice, this list of conditions and the following disclaimer. |
11 |
|
* |
12 |
< |
* 3. Redistributions in binary form must reproduce the above copyright |
12 |
> |
* 2. Redistributions in binary form must reproduce the above copyright |
13 |
|
* notice, this list of conditions and the following disclaimer in the |
14 |
|
* documentation and/or other materials provided with the |
15 |
|
* distribution. |
28 |
|
* arising out of the use of or inability to use software, even if the |
29 |
|
* University of Notre Dame has been advised of the possibility of |
30 |
|
* such damages. |
31 |
+ |
* |
32 |
+ |
* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your |
33 |
+ |
* research, please cite the appropriate papers when you publish your |
34 |
+ |
* work. Good starting points are: |
35 |
+ |
* |
36 |
+ |
* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
37 |
+ |
* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
38 |
+ |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
39 |
+ |
* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
40 |
+ |
* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). |
41 |
|
*/ |
42 |
|
|
43 |
|
#include <iostream> |
45 |
|
#include <sstream> |
46 |
|
#include "utils/StringTokenizer.hpp" |
47 |
|
|
48 |
< |
namespace oopse { |
48 |
> |
namespace OpenMD { |
49 |
|
|
50 |
|
|
51 |
< |
StringTokenizer::StringTokenizer(const std::string & str, const std::string & delim) |
52 |
< |
: tokenString_(str), delim_(delim), returnTokens_(false), |
53 |
< |
currentPos_(tokenString_.begin()), end_(tokenString_.end()){ |
51 |
> |
StringTokenizer::StringTokenizer(const std::string & str, const std::string & delim) |
52 |
> |
: tokenString_(str), delim_(delim), returnTokens_(false), |
53 |
> |
currentPos_(tokenString_.begin()), end_(tokenString_.end()){ |
54 |
|
|
55 |
< |
} |
55 |
> |
} |
56 |
|
|
57 |
< |
StringTokenizer::StringTokenizer(std::string::const_iterator& first, std::string::const_iterator& last, |
58 |
< |
const std::string & delim) |
59 |
< |
: tokenString_(first, last) , delim_(delim), returnTokens_(false), |
60 |
< |
currentPos_(tokenString_.begin()), end_(tokenString_.end()) { |
57 |
> |
StringTokenizer::StringTokenizer(std::string::const_iterator& first, std::string::const_iterator& last, |
58 |
> |
const std::string & delim) |
59 |
> |
: tokenString_(first, last) , delim_(delim), returnTokens_(false), |
60 |
> |
currentPos_(tokenString_.begin()), end_(tokenString_.end()) { |
61 |
|
|
62 |
< |
} |
62 |
> |
} |
63 |
|
|
64 |
< |
StringTokenizer::StringTokenizer(const std::string&str, const std::string&delim, |
65 |
< |
bool returnTokens) |
66 |
< |
: tokenString_(str), delim_(delim), returnTokens_(returnTokens), |
67 |
< |
currentPos_(tokenString_.begin()), end_(tokenString_.end()) { |
64 |
> |
StringTokenizer::StringTokenizer(const std::string&str, const std::string&delim, |
65 |
> |
bool returnTokens) |
66 |
> |
: tokenString_(str), delim_(delim), returnTokens_(returnTokens), |
67 |
> |
currentPos_(tokenString_.begin()), end_(tokenString_.end()) { |
68 |
|
|
69 |
< |
} |
69 |
> |
} |
70 |
|
|
71 |
< |
bool StringTokenizer::isDelimiter(const char c) { |
71 |
> |
bool StringTokenizer::isDelimiter(const char c) { |
72 |
|
return delim_.find(c) == std::string::npos ? false : true; |
73 |
< |
} |
73 |
> |
} |
74 |
|
|
75 |
< |
int StringTokenizer::countTokens() { |
75 |
> |
int StringTokenizer::countTokens() { |
76 |
|
|
77 |
|
std::string::const_iterator tmpIter = currentPos_; |
78 |
|
int numToken = 0; |
79 |
|
|
80 |
|
while (true) { |
81 |
|
|
82 |
< |
//skip delimiter first |
83 |
< |
while( tmpIter != end_ && isDelimiter(*tmpIter)) { |
84 |
< |
++tmpIter; |
82 |
> |
//skip delimiter first |
83 |
> |
while( tmpIter != end_ && isDelimiter(*tmpIter)) { |
84 |
> |
++tmpIter; |
85 |
|
|
86 |
< |
if (returnTokens_) { |
87 |
< |
//if delimiter is consider as token |
88 |
< |
++numToken; |
89 |
< |
} |
90 |
< |
} |
86 |
> |
if (returnTokens_) { |
87 |
> |
//if delimiter is consider as token |
88 |
> |
++numToken; |
89 |
> |
} |
90 |
> |
} |
91 |
|
|
92 |
< |
if (tmpIter == end_) { |
93 |
< |
break; |
94 |
< |
} |
92 |
> |
if (tmpIter == end_) { |
93 |
> |
break; |
94 |
> |
} |
95 |
|
|
96 |
< |
//encount a token here |
97 |
< |
while ( tmpIter != end_ && !isDelimiter(*tmpIter) ) { |
98 |
< |
++tmpIter; |
99 |
< |
} |
96 |
> |
//encount a token here |
97 |
> |
while ( tmpIter != end_ && !isDelimiter(*tmpIter) ) { |
98 |
> |
++tmpIter; |
99 |
> |
} |
100 |
|
|
101 |
< |
++numToken; |
101 |
> |
++numToken; |
102 |
|
|
103 |
|
} |
104 |
|
|
105 |
|
return numToken; |
106 |
< |
} |
106 |
> |
} |
107 |
|
|
108 |
< |
bool StringTokenizer::hasMoreTokens() { |
108 |
> |
bool StringTokenizer::hasMoreTokens() { |
109 |
|
|
110 |
|
if (currentPos_ == end_) { |
111 |
< |
return false; |
111 |
> |
return false; |
112 |
|
} else if (returnTokens_) { |
113 |
< |
return true; |
113 |
> |
return true; |
114 |
|
} else { |
115 |
< |
std::string::const_iterator i = currentPos_; |
115 |
> |
std::string::const_iterator i = currentPos_; |
116 |
|
|
117 |
< |
//walk through the remaining string to check whether it contains non-delimeter or not |
118 |
< |
while(i != end_ && isDelimiter(*i)) { |
119 |
< |
++i; |
120 |
< |
} |
117 |
> |
//walk through the remaining string to check whether it contains non-delimeter or not |
118 |
> |
while(i != end_ && isDelimiter(*i)) { |
119 |
> |
++i; |
120 |
> |
} |
121 |
|
|
122 |
< |
return i != end_ ? true : false; |
122 |
> |
return i != end_ ? true : false; |
123 |
|
} |
124 |
< |
} |
124 |
> |
} |
125 |
|
|
126 |
< |
std::string StringTokenizer::nextToken() { |
126 |
> |
std::string StringTokenizer::nextToken() { |
127 |
|
std::string result; |
128 |
|
|
129 |
|
if(currentPos_ != end_) { |
130 |
< |
std::insert_iterator<std::string> insertIter(result, result.begin()); |
130 |
> |
std::insert_iterator<std::string> insertIter(result, result.begin()); |
131 |
|
|
132 |
< |
while( currentPos_ != end_ && isDelimiter(*currentPos_)) { |
132 |
> |
while( currentPos_ != end_ && isDelimiter(*currentPos_)) { |
133 |
|
|
134 |
< |
if (returnTokens_) { |
135 |
< |
*insertIter++ = *currentPos_++; |
136 |
< |
return result; |
137 |
< |
} |
134 |
> |
if (returnTokens_) { |
135 |
> |
*insertIter++ = *currentPos_++; |
136 |
> |
return result; |
137 |
> |
} |
138 |
|
|
139 |
< |
++currentPos_; |
140 |
< |
} |
139 |
> |
++currentPos_; |
140 |
> |
} |
141 |
|
|
142 |
< |
while (currentPos_ != end_ && !isDelimiter(*currentPos_)) { |
143 |
< |
*insertIter++ = *currentPos_++; |
144 |
< |
} |
142 |
> |
while (currentPos_ != end_ && !isDelimiter(*currentPos_)) { |
143 |
> |
*insertIter++ = *currentPos_++; |
144 |
> |
} |
145 |
|
|
146 |
|
} |
147 |
|
|
148 |
|
return result; |
149 |
< |
} |
149 |
> |
} |
150 |
|
|
151 |
< |
bool StringTokenizer::nextTokenAsBool() { |
151 |
> |
bool StringTokenizer::nextTokenAsBool() { |
152 |
|
std::string token = nextToken(); |
153 |
|
std::istringstream iss(token); |
154 |
|
bool result; |
155 |
|
|
156 |
|
if (iss >> result) { |
157 |
< |
return result; |
157 |
> |
return result; |
158 |
|
} else { |
159 |
< |
std::cerr << "unable to convert " << token << " to a bool" << std::endl; |
160 |
< |
return false; |
159 |
> |
std::cerr << "unable to convert " << token << " to a bool" << std::endl; |
160 |
> |
return false; |
161 |
|
} |
162 |
< |
} |
163 |
< |
|
164 |
< |
int StringTokenizer::nextTokenAsInt() { |
162 |
> |
} |
163 |
> |
|
164 |
> |
//Since libstdc++(GCC 3.2) has an i/ostream::operator>>/<<(streambuf*) bug (Bug 9318) |
165 |
> |
//Instead of using iostream facility, we use C library |
166 |
> |
int StringTokenizer::nextTokenAsInt() { |
167 |
|
std::string token = nextToken(); |
168 |
< |
std::istringstream iss(token); |
169 |
< |
int result; |
170 |
< |
|
168 |
< |
if (iss >> result) { |
169 |
< |
return result; |
170 |
< |
} else { |
171 |
< |
std::cerr << "unable to convert " << token << " to an integer" << std::endl; |
172 |
< |
return 0; |
173 |
< |
} |
174 |
< |
} |
168 |
> |
|
169 |
> |
return atoi(token.c_str()); |
170 |
> |
} |
171 |
|
|
172 |
< |
float StringTokenizer::nextTokenAsFloat() { |
172 |
> |
float StringTokenizer::nextTokenAsFloat() { |
173 |
|
std::string token = nextToken(); |
174 |
< |
std::istringstream iss(token); |
175 |
< |
float result; |
176 |
< |
|
181 |
< |
if (iss >> result) { |
182 |
< |
return result; |
183 |
< |
} else { |
184 |
< |
std::cerr << "unable to convert " << token << " to a float" << std::endl; |
185 |
< |
return 0.0; |
186 |
< |
} |
187 |
< |
} |
174 |
> |
convertFortranNumber(token); |
175 |
> |
return (float) (atof(token.c_str())); |
176 |
> |
} |
177 |
|
|
178 |
< |
double StringTokenizer::nextTokenAsDouble() { |
178 |
> |
RealType StringTokenizer::nextTokenAsDouble() { |
179 |
|
std::string token = nextToken(); |
180 |
< |
std::istringstream iss(token); |
181 |
< |
double result; |
182 |
< |
|
194 |
< |
if (iss >> result) { |
195 |
< |
return result; |
196 |
< |
} else { |
197 |
< |
std::cerr << "unable to convert " << token << " to a double" << std::endl; |
198 |
< |
return 0.0; |
199 |
< |
} |
200 |
< |
} |
180 |
> |
convertFortranNumber(token); |
181 |
> |
return atof(token.c_str()); |
182 |
> |
} |
183 |
|
|
184 |
< |
std::string StringTokenizer::peekNextToken() { |
184 |
> |
std::string StringTokenizer::peekNextToken() { |
185 |
|
std::string result; |
186 |
|
std::string::const_iterator tmpIter = currentPos_; |
187 |
|
|
188 |
|
if(tmpIter != end_) { |
189 |
< |
std::insert_iterator<std::string> insertIter(result, result.begin()); |
189 |
> |
std::insert_iterator<std::string> insertIter(result, result.begin()); |
190 |
|
|
191 |
< |
while(tmpIter != end_ && isDelimiter(*tmpIter)) { |
191 |
> |
while(tmpIter != end_ && isDelimiter(*tmpIter)) { |
192 |
|
|
193 |
< |
if (returnTokens_) { |
194 |
< |
*insertIter++ = *tmpIter++; |
195 |
< |
return result; |
196 |
< |
} |
193 |
> |
if (returnTokens_) { |
194 |
> |
*insertIter++ = *tmpIter++; |
195 |
> |
return result; |
196 |
> |
} |
197 |
|
|
198 |
< |
++tmpIter; |
199 |
< |
} |
198 |
> |
++tmpIter; |
199 |
> |
} |
200 |
|
|
201 |
< |
while (tmpIter != end_ && !isDelimiter(*tmpIter)) { |
202 |
< |
*insertIter++ = *tmpIter++; |
203 |
< |
} |
201 |
> |
while (tmpIter != end_ && !isDelimiter(*tmpIter)) { |
202 |
> |
*insertIter++ = *tmpIter++; |
203 |
> |
} |
204 |
|
} |
205 |
|
|
206 |
|
return result; |
207 |
< |
} |
207 |
> |
} |
208 |
|
|
209 |
< |
}//end namespace oopse |
209 |
> |
std::vector<std::string> StringTokenizer::getAllTokens() { |
210 |
> |
std::vector<std::string> tokens; |
211 |
> |
while (hasMoreTokens()) { |
212 |
> |
tokens.push_back(nextToken()); |
213 |
> |
} |
214 |
> |
return tokens; |
215 |
> |
} |
216 |
> |
void StringTokenizer::convertFortranNumber(std::string& fortranNumber) { |
217 |
> |
std::string::iterator i; |
218 |
> |
for(i = fortranNumber.begin(); i != fortranNumber.end(); ++i) { |
219 |
> |
if (*i == 'd' || *i == 'D') { |
220 |
> |
*i = 'E'; |
221 |
> |
} |
222 |
> |
} |
223 |
> |
} |
224 |
|
|
225 |
+ |
}//end namespace OpenMD |
226 |
+ |
|