Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
xemacs has been drafted to perform our indentation services
merging new_design branch into OOPSE-2.0
remove old Vector3d.hpp from application/simpleBuilder
adding GenericFactory Test Case. GenericFactory now can bed used to creat ForcefieldFactory and IntegratorFactory etc.
more classes get reconstructed
GenericFactory pass unit test
fix some bugs in Quaternion class
adding generic factory and vector test case
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