fixing bugs in randomBuilder

Massive changes preparing for release of OOPSE-4: The main difference
is that the new MD file format (.md, .dump, .eor) now contains meta-data
information along with the configuration information.

Massive changes for GB code with multiple ellipsoid types (a la
Cleaver's paper).

Also, changes in hydrodynamics code to make HydroProp a somewhat
smarter class (rather than just a struct).

Adding single precision capabilities to the fortran side

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Many performance improvements

changed the interface a bit

Wiped the spline with derivatives and corrected a boundary comparision error by eliminating the check.  This algorithm REQUIRES known first derivatives at the endpoints.

Heavily modified interpolation module, also moved to "utils"

change the epsilon of numeric_limit

autoconf modernization and cruft removal

replace isType<int> with isInteger

the standard library came with SUN compiler does not have a conforming std::use_facet, define a macro
to handle it. Adding exception handling to SimCreator.

added missing include

End of the Link --> List
Return of the Oject-Oriented
replace yacc/lex parser with antlr parser

OptionSectionParser get compiled

replace c++ style comment in c files

Breaky breaky!

NPrT in progress

Fixed gcc4 bug...

xemacs has been drafted to perform our indentation services

more memory leak are fixed

Further changes to vector_class destroy function.

Added code to delete vector.

OOPSE_itoa!

fix compilation problem for g++ 3.4

fix problem in sun

return residentMem in byte

(1) adding #ifdef __RWSTD to make sun compiler happy
(2) fix pair density calculation problem when two selections intersect with each other

bug fix for null termination

bugfixes for residentMem on LINUX

modifications to estimate memory in use by other processes
autoconf fixes
ps syntax checking
config.h file cleaning

dynamicProps get built

issue commented out in wildcards

minor change in BitSet

adding wildcard class; NameFinder is finished

Selection in progress

moved Package variable into subdirectory makefiles to speed up
the building process

using c library to do conversion instead of using iostream due to a bug in
libstdc++(GCC 3.2)

port to SGI platform

More work on StuntDouble, Atom, DirectionalAtom and RigidBody

Minor change in next_combination

change documentation of next_combination.hpp

adding replace wildcard function

STL next_permutation like next_combination is working

Adding Generic Tuple3 and Tuple4

more classes get reconstructed

remove some junk files

GenericData and PropertyMap  pass unit test.

more fortran name mangling

changed around findBegin

fix some bugs in Quaternion class

adding generic factory and vector test case

moved the getopt stuff

change Makefile to relative path

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Import of OOPSE v. 2.0