90 |
|
|
91 |
|
// build the scaling factor used to modulate the forces and torques |
92 |
|
factor_ = pow(tIntLambda_, tIntK_); |
93 |
+ |
|
94 |
+ |
printf("%f is the factor\n",factor_); |
95 |
|
|
96 |
|
} |
97 |
|
|
108 |
|
Vector3d frc; |
109 |
|
Vector3d trq; |
110 |
|
|
109 |
– |
curSnapshot = info_->getSnapshotManager()->getCurrentSnapshot(); |
110 |
– |
|
111 |
|
// perform the standard calcForces first |
112 |
|
ForceManager::calcForces(needPotential, needStress); |
113 |
|
|
114 |
+ |
curSnapshot = info_->getSnapshotManager()->getCurrentSnapshot(); |
115 |
+ |
|
116 |
|
// now scale forces and torques of all the integrableObjects |
117 |
|
|
118 |
|
for (mol = info_->beginMolecule(mi); mol != NULL; |
130 |
|
integrableObject->setTrq(trq); |
131 |
|
} |
132 |
|
} |
131 |
– |
|
132 |
– |
// set vraw to be the unmodulated potential |
133 |
– |
lrPot_ = curSnapshot->statData[Stats::POTENTIAL_ENERGY]; |
134 |
– |
curSnapshot->statData[Stats::VRAW] = lrPot_; |
135 |
– |
|
136 |
– |
// modulate the potential and update the snapshot |
137 |
– |
lrPot_ *= factor_; |
138 |
– |
curSnapshot->statData[Stats::POTENTIAL_ENERGY] = lrPot_; |
133 |
|
} |
134 |
+ |
|
135 |
+ |
// set vraw to be the unmodulated potential |
136 |
+ |
lrPot_ = curSnapshot->statData[Stats::LONG_RANGE_POTENTIAL]; |
137 |
+ |
curSnapshot->statData[Stats::VRAW] = lrPot_; |
138 |
|
|
139 |
+ |
// modulate the potential and update the snapshot |
140 |
+ |
lrPot_ *= factor_; |
141 |
+ |
curSnapshot->statData[Stats::LONG_RANGE_POTENTIAL] = lrPot_; |
142 |
+ |
|
143 |
+ |
|
144 |
|
// do crystal restraint forces for thermodynamic integration |
145 |
|
if (simParam->getUseSolidThermInt()) { |
146 |
|
|
147 |
|
lrPot_ += restraint_->Calc_Restraint_Forces(); |
148 |
< |
curSnapshot->statData[Stats::POTENTIAL_ENERGY] = lrPot_; |
148 |
> |
curSnapshot->statData[Stats::LONG_RANGE_POTENTIAL] = lrPot_; |
149 |
|
|
150 |
|
vHarm_ = restraint_->getVharm(); |
151 |
|
curSnapshot->statData[Stats::VHARM] = vHarm_; |