--- trunk/src/restraints/MolecularRestraint.cpp 2013/06/16 15:15:42 1879 +++ trunk/src/restraints/MolecularRestraint.cpp 2014/10/16 19:13:51 2024 @@ -71,7 +71,7 @@ namespace OpenMD { pot_ += p; - restInfo_[rtDisplacement] = std::make_pair(r, p); + if (printRest_) restInfo_[rtDisplacement] = std::make_pair(r, p); for(it = forces_.begin(); it != forces_.end(); ++it) (*it) = -kDisp_ * del * scaleFactor_; @@ -152,37 +152,34 @@ namespace OpenMD { if (restType_ & rtTwist){ dTwist = twistAngle - twist0_; - dVdtwist = kTwist_ * sin(dTwist) ; - p = kTwist_ * (1.0 - cos(dTwist) ) ; + /// dVdtwist = kTwist_ * sin(dTwist) ; + /// p = kTwist_ * (1.0 - cos(dTwist) ) ; + dVdtwist = kTwist_ * dTwist; + p = 0.5 * kTwist_ * dTwist * dTwist; pot_ += p; tBody -= dVdtwist * V3Z; - restInfo_[rtTwist] = std::make_pair(twistAngle, p); + if (printRest_) restInfo_[rtTwist] = std::make_pair(twistAngle, p); } -// if (restType_ & rtSwing){ -// dSwing = swingAngle - swing0_; -// dVdswing = kSwing_ * 2.0 * sin(2.0 * dSwing); -// p = kSwing_ * (1.0 - cos(2.0 * dSwing)); -// pot_ += p; -// tBody -= dVdswing * swingAxis; -// restInfo_[rtSwing] = std::make_pair(swingAngle, p); -// } - if (restType_ & rtSwingX){ dSwingX = swingX - swingX0_; - dVdswingX = kSwingX_ * 2.0 * sin(2.0 * dSwingX); - p = kSwingX_ * (1.0 - cos(2.0 * dSwingX)); + /// dVdswingX = kSwingX_ * 2.0 * sin(2.0 * dSwingX); + /// p = kSwingX_ * (1.0 - cos(2.0 * dSwingX)); + dVdswingX = kSwingX_ * dSwingX; + p = 0.5 * kSwingX_ * dSwingX * dSwingX; pot_ += p; tBody -= dVdswingX * V3X; - restInfo_[rtSwingX] = std::make_pair(swingX, p); + if (printRest_) restInfo_[rtSwingX] = std::make_pair(swingX, p); } if (restType_ & rtSwingY){ dSwingY = swingY - swingY0_; - dVdswingY = kSwingY_ * 2.0 * sin(2.0 * dSwingY); - p = kSwingY_ * (1.0 - cos(2.0 * dSwingY)); + /// dVdswingY = kSwingY_ * 2.0 * sin(2.0 * dSwingY); + /// p = kSwingY_ * (1.0 - cos(2.0 * dSwingY)); + dVdswingY = kSwingY_ * dSwingY; + p = 0.5 * kSwingX_ * dSwingY * dSwingY; pot_ += p; tBody -= dVdswingY * V3Y; - restInfo_[rtSwingY] = std::make_pair(swingY, p); + if (printRest_) restInfo_[rtSwingY] = std::make_pair(swingY, p); }