--- trunk/src/primitives/Torsion.cpp 2010/06/17 14:48:02 1446 +++ trunk/src/primitives/Torsion.cpp 2013/06/16 15:15:42 1879 @@ -35,10 +35,14 @@ * * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). - * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). - * [4] Vardeman & Gezelter, in progress (2009). + * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). + * [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). + * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). */ +#include "config.h" +#include + #include "primitives/Torsion.hpp" namespace OpenMD { @@ -47,7 +51,7 @@ namespace OpenMD { TorsionType *tt) : atom1_(atom1), atom2_(atom2), atom3_(atom3), atom4_(atom4), torsionType_(tt) { } - void Torsion::calcForce(RealType& angle) { + void Torsion::calcForce(RealType& angle, bool doParticlePot) { Vector3d pos1 = atom1_->getPos(); Vector3d pos2 = atom2_->getPos(); @@ -98,10 +102,12 @@ namespace OpenMD { atom3_->addFrc(f3 - f2); atom4_->addFrc(-f3); - atom1_->addParticlePot(potential_); - atom2_->addParticlePot(potential_); - atom3_->addParticlePot(potential_); - atom4_->addParticlePot(potential_); + if (doParticlePot) { + atom1_->addParticlePot(potential_); + atom2_->addParticlePot(potential_); + atom3_->addParticlePot(potential_); + atom4_->addParticlePot(potential_); + } angle = acos(cos_phi) /M_PI * 180.0; }