--- trunk/src/primitives/GhostTorsion.cpp 2005/01/25 17:45:23 273 +++ trunk/src/primitives/GhostTorsion.cpp 2005/11/16 23:10:02 749 @@ -1,4 +1,4 @@ - /* +/* * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. * * The University of Notre Dame grants you ("Licensee") a @@ -43,11 +43,11 @@ namespace oopse { namespace oopse { -GhostTorsion::GhostTorsion(Atom *atom1, Atom *atom2, DirectionalAtom* ghostAtom, - TorsionType *tt) : Torsion(atom1, atom2, ghostAtom, ghostAtom, tt) {} + GhostTorsion::GhostTorsion(Atom *atom1, Atom *atom2, DirectionalAtom* ghostAtom, + TorsionType *tt) : Torsion(atom1, atom2, ghostAtom, ghostAtom, tt) {} -void GhostTorsion::calcForce() { - DirectionalAtom* ghostAtom = static_cast(atom2_); + void GhostTorsion::calcForce(double& angle) { + DirectionalAtom* ghostAtom = static_cast(atom3_); Vector3d pos1 = atom1_->getPos(); Vector3d pos2 = atom2_->getPos(); @@ -71,16 +71,13 @@ void GhostTorsion::calcForce() { // Calculate the sin and cos double cos_phi = dot(A, B) ; - double sin_phi = dot(C, B); - double dVdPhi; - torsionType_->calcForce(cos_phi, sin_phi, potential_, dVdPhi); + double dVdcosPhi; + torsionType_->calcForce(cos_phi, potential_, dVdcosPhi); Vector3d dcosdA = (cos_phi * A - B) /rA; Vector3d dcosdB = (cos_phi * B - A) /rB; - double dVdcosPhi = -dVdPhi / sin_phi; - Vector3d f1 = dVdcosPhi * cross(r32, dcosdA); Vector3d f2 = dVdcosPhi * ( cross(r43, dcosdB) - cross(r21, dcosdA)); Vector3d f3 = dVdcosPhi * cross(dcosdB, r32); @@ -92,7 +89,9 @@ void GhostTorsion::calcForce() { f3.negate(); ghostAtom->addTrq(cross(r43, f3)); -} + angle = acos(cos_phi) /M_PI * 180.0; + } + }