Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
A few formatting changes to prettify the code
Adding single precision capabilities to c++ side
xemacs has been drafted to perform our indentation services
(1) complete section parser's error message (2) add GhostTorsion (3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor
merging new_design branch into OOPSE-2.0
isLinear and linearAxis are virtual in StuntDouble, but are implemented by DirectionalAtom and RigidBody In StuntDouble, they should return false and "-1" but there should be logic to figure them out in the other two classes
change the #include in source files
Import of OOPSE v. 2.0
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