103 |
|
virtual pair<int, int> getGroupTypes(int cg1, int cg2) = 0; |
104 |
|
|
105 |
|
// Group->atom bookkeeping |
106 |
< |
virtual vector<int> getAtomsInGroupRow(int cg1) = 0; |
106 |
> |
virtual vector<int> getAtomsInGroupRow(int cg1) = 0; |
107 |
|
virtual vector<int> getAtomsInGroupColumn(int cg2) = 0; |
108 |
+ |
|
109 |
|
virtual Vector3d getAtomToGroupVectorRow(int atom1, int cg1) = 0; |
110 |
|
virtual Vector3d getAtomToGroupVectorColumn(int atom2, int cg2) = 0; |
111 |
< |
virtual RealType getMfactRow(int atom1) = 0; |
112 |
< |
virtual RealType getMfactColumn(int atom2) = 0; |
111 |
> |
virtual RealType getMassFactorRow(int atom1) = 0; |
112 |
> |
virtual RealType getMassFactorColumn(int atom2) = 0; |
113 |
|
|
114 |
|
// spatial data |
115 |
|
virtual Vector3d getIntergroupVector(int cg1, int cg2) = 0; |
154 |
|
//& column. It will be up to |
155 |
|
//the specific decomposition |
156 |
|
//method to fill this. |
157 |
+ |
|
158 |
+ |
vector<vector<int> > groupList_; |
159 |
|
vector<Vector3i> cellOffsets_; |
160 |
|
Vector3i nCells_; |
161 |
|
vector<vector<int> > cellList_; |