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* [4] Vardeman & Gezelter, in progress (2009). |
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*/ |
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< |
#ifndef FORCEDECOMPOSITION_COMMUNICATOR_HPP |
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< |
#define FORCEDECOMPOSITION_COMMUNICATOR_HPP |
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> |
#ifndef PARALLEL_COMMUNICATOR_HPP |
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#define PARALLEL_COMMUNICATOR_HPP |
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#include <config.h> |
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#include <mpi.h> |
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#include "math/SquareMatrix3.hpp" |
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+ |
using namespace std; |
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namespace OpenMD{ |
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#ifdef IS_MPI |
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< |
enum direction { |
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I = 0, |
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J = 1 |
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enum communicatorType { |
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Global = 0, |
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Row = 1, |
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Column = 2 |
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}; |
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|
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template<typename T> |
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struct MPITraits |
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{ |
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static const MPI::Datatype datatype; |
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static const int dim; |
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template<class T> |
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class MPITraits { |
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public: |
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static MPI::Datatype Type(); |
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> |
static int Length() { return 1; }; |
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}; |
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|
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template<> const MPI::Datatype MPITraits<int>::datatype = MPI_INT; |
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template<> const int MPITraits<int>::dim = 1; |
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template<> const MPI::Datatype MPITraits<RealType>::datatype = MPI_REALTYPE; |
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< |
template<> const int MPITraits<RealType>::dim = 1; |
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< |
template<> const MPI::Datatype MPITraits<Vector3d>::datatype = MPI_REALTYPE; |
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template<> const int MPITraits<Vector3d>::dim = 3; |
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template<> const MPI::Datatype MPITraits<Mat3x3d>::datatype = MPI_REALTYPE; |
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template<> const int MPITraits<Mat3x3d>::dim = 9; |
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> |
template<> inline MPI::Datatype MPITraits<int>::Type() { return MPI_INT; } |
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> |
template<> inline MPI::Datatype MPITraits<RealType>::Type() { return MPI_REALTYPE; } |
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> |
|
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> |
template<class T, unsigned int Dim> |
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> |
class MPITraits< Vector<T, Dim> > { |
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> |
public: |
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> |
static MPI::Datatype Type() { return MPITraits<T>::Type(); } |
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> |
static int Length() {return Dim;} |
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}; |
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> |
|
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> |
template<class T> |
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> |
class MPITraits< Vector3<T> > { |
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public: |
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> |
static MPI::Datatype Type() { return MPITraits<T>::Type(); } |
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> |
static int Length() {return 3;} |
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> |
}; |
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> |
|
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> |
template<class T, unsigned int Row, unsigned int Col> |
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> |
class MPITraits< RectMatrix<T, Row, Col> > { |
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> |
public: |
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> |
static MPI::Datatype Type() { return MPITraits<T>::Type(); } |
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> |
static int Length() {return Row * Col;} |
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}; |
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> |
|
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> |
template<class T> |
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> |
class MPITraits< SquareMatrix3<T> > { |
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public: |
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> |
static MPI::Datatype Type() { return MPITraits<T>::Type(); } |
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> |
static int Length() {return 9;} |
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}; |
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< |
template<direction D, typename T> |
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< |
class Comm { |
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> |
|
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> |
template<communicatorType D, typename T> |
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> |
class Communicator { |
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public: |
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< |
Comm<D, T>(int nObjects) { |
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> |
Communicator<D, T>(int nObjects) { |
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int nProc = MPI::COMM_WORLD.Get_size(); |
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int myRank = MPI::COMM_WORLD.Get_rank(); |
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rowIndex_ = myRank / nColumns; |
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columnIndex_ = myRank % nColumns; |
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< |
if (D == I) { |
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> |
switch(D) { |
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> |
case Row : |
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myComm = MPI::COMM_WORLD.Split(rowIndex_, 0); |
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< |
} else { |
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> |
break; |
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> |
case Column: |
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myComm = MPI::COMM_WORLD.Split(columnIndex_, 0); |
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+ |
break; |
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+ |
case Global: |
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myComm = MPI::COMM_WORLD.Split(myRank, 0); |
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} |
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int nCommProcs = myComm.Get_size(); |
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|
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< |
counts.reserve(nCommProcs); |
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< |
displacements.reserve(nCommProcs); |
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> |
counts.resize(nCommProcs, 0); |
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> |
displacements.resize(nCommProcs, 0); |
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|
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< |
planSize_ = MPITraits<T>::dim * nObjects; |
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> |
planSize_ = MPITraits<T>::Length() * nObjects; |
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myComm.Allgather(&planSize_, 1, MPI::INT, &counts[0], 1, MPI::INT); |
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displacements[0] = 0; |
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for (int i = 1; i < nCommProcs; i++) { |
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displacements[i] = displacements[i-1] + counts[i-1]; |
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< |
} |
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> |
} |
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> |
|
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> |
size_ = 0; |
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> |
for (int i = 0; i < nCommProcs; i++) { |
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> |
size_ += counts[i]; |
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> |
} |
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} |
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|
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+ |
|
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+ |
void gather(vector<T>& v1, vector<T>& v2) { |
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|
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< |
void gather(std::vector<T>& v1, std::vector<T>& v2) { |
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> |
// an assert would be helpful here to make sure the vectors are the |
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> |
// correct geometry |
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|
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myComm.Allgatherv(&v1[0], |
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planSize_, |
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< |
MPITraits<T>::datatype, |
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> |
MPITraits<T>::Type(), |
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&v2[0], |
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&counts[0], |
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&displacements[0], |
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< |
MPITraits<T>::datatype); |
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> |
MPITraits<T>::Type()); |
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} |
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– |
|
| 171 |
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|
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< |
|
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< |
void scatter(std::vector<T>& v1, std::vector<T>& v2) { |
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< |
|
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> |
|
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> |
|
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> |
void scatter(vector<T>& v1, vector<T>& v2) { |
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> |
// an assert would be helpful here to make sure the vectors are the |
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> |
// correct geometry |
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> |
|
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myComm.Reduce_scatter(&v1[0], &v2[0], &counts[0], |
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< |
MPITraits<T>::datatype, MPI::SUM); |
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> |
MPITraits<T>::Type(), MPI::SUM); |
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} |
| 181 |
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|
| 182 |
+ |
int getSize() { |
| 183 |
+ |
return size_; |
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+ |
} |
| 185 |
+ |
|
| 186 |
|
private: |
| 187 |
|
int planSize_; ///< how many are on local proc |
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|
int rowIndex_; |
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|
int columnIndex_; |
| 190 |
< |
std::vector<int> counts; |
| 191 |
< |
std::vector<int> displacements; |
| 190 |
> |
int size_; |
| 191 |
> |
vector<int> counts; |
| 192 |
> |
vector<int> displacements; |
| 193 |
|
MPI::Intracomm myComm; |
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|
}; |
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|
