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tim |
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/********************************************************************** |
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rand.cpp - Pseudo random number generator. |
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Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. |
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Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison |
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This file is part of the Open Babel project. |
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For more information, see <http://openbabel.sourceforge.net/> |
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This program is free software; you can redistribute it and/or modify |
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it under the terms of the GNU General Public License as published by |
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the Free Software Foundation version 2 of the License. |
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This program is distributed in the hope that it will be useful, |
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but WITHOUT ANY WARRANTY; without even the implied warranty of |
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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GNU General Public License for more details. |
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***********************************************************************/ |
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/* derived from sample.c |
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* Pseudo-Random Number Generator Generator |
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* Roger Sayle, Metaphorics LLC |
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* Version 1.2, September 1998 |
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*/ |
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#include <stdlib.h> |
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#include <stdio.h> |
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#include <math.h> |
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#include "mol.hpp" |
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#include "vector3.hpp" |
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#include "obutil.hpp" |
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#ifndef True |
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#define True 1 |
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#define False 0 |
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#endif |
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#define IsEven(x) (((x)&1)==0) |
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#define IsOdd(x) (((x)&1)!=0) |
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#define BothEven(x,y) IsEven((x)|(y)) |
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#define IsPrime(x) (!IsEven((x))&&IsOddPrime((x))) |
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#define HiPart(x) (x>>16) |
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#define LoPart(x) ((x)&0xffff) |
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/* The maximum number of unique prime factors of a 32 bit number */ |
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/* 2*3*5*7*11*13*17*19*23*29 = 6469693230 > 2^32 = 4294967296 */ |
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#define MAXFACT 10 |
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namespace OpenBabel |
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{ |
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#define MAXPRIMES 256 |
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static int primes[MAXPRIMES] = { |
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1, 2, 3, 5, 7, 11, 13, 17, 19, 23, |
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29, 31, 37, 41, 43, 47, 53, 59, 61, 67, |
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71, 73, 79, 83, 89, 97, 101, 103, 107, 109, |
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113, 127, 131, 137, 139, 149, 151, 157, 163, 167, |
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173, 179, 181, 191, 193, 197, 199, 211, 223, 227, |
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229, 233, 239, 241, 251, 257, 263, 269, 271, 277, |
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281, 283, 293, 307, 311, 313, 317, 331, 337, 347, |
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349, 353, 359, 367, 373, 379, 383, 389, 397, 401, |
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409, 419, 421, 431, 433, 439, 443, 449, 457, 461, |
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463, 467, 479, 487, 491, 499, 503, 509, 521, 523, |
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541, 547, 557, 563, 569, 571, 577, 587, 593, 599, |
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601, 607, 613, 617, 619, 631, 641, 643, 647, 653, |
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659, 661, 673, 677, 683, 691, 701, 709, 719, 727, |
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733, 739, 743, 751, 757, 761, 769, 773, 787, 797, |
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809, 811, 821, 823, 827, 829, 839, 853, 857, 859, |
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863, 877, 881, 883, 887, 907, 911, 919, 929, 937, |
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941, 947, 953, 967, 971, 977, 983, 991, 997, 1009, |
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1013, 1019, 1021, 1031, 1033, 1039, 1049, 1051, 1061, 1063, |
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1069, 1087, 1091, 1093, 1097, 1103, 1109, 1117, 1123, 1129, |
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1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, 1217, |
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1223, 1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, |
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1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, |
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1373, 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, |
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1451, 1453, 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, |
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1511, 1523, 1531, 1543, 1549, 1553, 1559, 1567, 1571, 1579, |
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1583, 1597, 1601, 1607, 1609, 1613 |
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}; |
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static unsigned int isqrt( unsigned int val ) |
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{ |
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register unsigned int temp; |
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register unsigned int rem; |
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register int i,result; |
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i = 16; |
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while( !(val&((unsigned int)3<<30)) && i ) |
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{ |
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val <<= 2; |
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i--; |
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} |
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if( i ) |
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{ |
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rem = (val>>30)-1; |
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val <<= 2; |
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result = 1; |
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i--; |
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while( i ) |
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{ |
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rem = (rem<<2) | (val>>30); |
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result <<= 1; |
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val <<= 2; |
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temp = result<<1; |
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if( rem > temp ) |
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{ |
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rem -= temp|1; |
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result |= 1; |
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} |
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i--; |
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} |
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return result; |
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} |
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else |
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return 0; |
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} |
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static int IsOddPrime( unsigned int x ) |
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{ |
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register unsigned int root; |
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register unsigned int i; |
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root = isqrt(x); |
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for( i=2; i<MAXPRIMES-1; i++ ) |
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{ |
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if( (x%primes[i]) == 0 ) |
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return False; |
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if( (unsigned int) primes[i] >= root ) |
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return True; |
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} |
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for( i=primes[MAXPRIMES-1]; i<=root; i+=2 ) |
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if( (x%i) == 0 ) |
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return False; |
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return True; |
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} |
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static int RelativelyPrime( unsigned int x, unsigned int y ) |
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{ |
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if( BothEven(x,y) ) |
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return False; |
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if( IsEven(x) ) |
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{ |
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do |
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{ |
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x >>= 1; |
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} |
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while( IsEven(x) ); |
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} |
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else |
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while( IsEven(y) ) |
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y >>= 1; |
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while( x != y ) |
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{ |
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if( x > y ) |
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{ |
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x -= y; |
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do |
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{ |
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x >>= 1; |
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} |
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while( IsEven(x) ); |
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} |
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else if( x < y ) |
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{ |
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y -= x; |
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do |
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{ |
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y >>= 1; |
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} |
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while( IsEven(y) ); |
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} |
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} |
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return( x == 1 ); |
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} |
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void DoubleAdd( DoubleType *x, unsigned int y ) |
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{ |
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x->lo += y; |
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if( x->lo < y ) |
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x->hi++; |
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} |
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void DoubleMultiply( unsigned int x, unsigned int y, DoubleType *z ) |
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{ |
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register unsigned int x0, x1, x2, x3; |
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register unsigned int hx, lx; |
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register unsigned int hy, ly; |
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hx = HiPart(x); |
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lx = LoPart(x); |
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hy = HiPart(y); |
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ly = LoPart(y); |
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x0 = lx*ly; |
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x1 = lx*hy; |
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x2 = hx*ly; |
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x3 = hx*hy; |
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x1 += HiPart(x0); |
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x1 += x2; |
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if( x1 < x2 ) |
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x3 += (1<<16); |
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z->hi = HiPart(x1) + x3; |
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z->lo = (LoPart(x1)<<16) + LoPart(x0); |
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} |
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static int LeadingZeros( unsigned int x ) |
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{ |
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static int table[256] = { |
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0,1,2,2,3,3,3,3,4,4,4,4,4,4,4,4,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5, |
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6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6, |
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7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7, |
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7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7, |
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8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8, |
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8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8, |
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8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8, |
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8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8,8 |
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}; |
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if( x >= (1<<16) ) |
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{ |
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if( x >= (1<<24) ) |
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{ |
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return 8-table[x>>24]; |
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} |
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else |
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return 16-table[x>>16]; |
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} |
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else if( x >= (1<<8) ) |
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{ |
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return 24-table[x>>8]; |
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} |
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else |
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return 32-table[x]; |
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} |
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unsigned int DoubleModulus( DoubleType *n, unsigned int d ) |
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{ |
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register unsigned int d1, d0; |
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register unsigned int r1, r0; |
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register unsigned int m,s; |
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s = LeadingZeros(d); |
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if( s > 0 ) |
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{ |
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d = d<<s; |
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n->hi = (n->hi<<s) | (n->lo>>(32-s)); |
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n->lo = n->lo << s; |
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} |
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d1 = HiPart(d); |
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d0 = LoPart(d); |
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m = ((unsigned int)(n->hi/d1)) * d0; |
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r1 = ((n->hi%d1)<<16) + HiPart(n->lo); |
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if( r1 < m ) |
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{ |
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r1 += d; |
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if( (r1>=d) && (r1<m) ) |
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r1 += d; |
270 |
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} |
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r1 -= m; |
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273 |
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m = ((unsigned int)(r1/d1)) * d0; |
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r0 = ((r1%d1)<<16) + LoPart(n->lo); |
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if( r0 < m ) |
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{ |
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r0 += d; |
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if( (r0>=d) && (r0<m) ) |
279 |
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r0 += d; |
280 |
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} |
281 |
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r0 -= m; |
282 |
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283 |
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return r0 >> s; |
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} |
285 |
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286 |
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static int DeterminePotency( unsigned int m, unsigned int a ) |
287 |
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{ |
288 |
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auto DoubleType d; |
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register unsigned int k; |
290 |
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register unsigned int b; |
291 |
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register int s; |
292 |
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293 |
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b = a-1; |
294 |
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k = b; |
295 |
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s = 1; |
296 |
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while( (k!=0) && (s<100) ) |
297 |
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{ |
298 |
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DoubleMultiply(k,b,&d); |
299 |
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k = DoubleModulus(&d,m); |
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s++; |
301 |
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} |
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return s; |
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} |
304 |
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305 |
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static int DetermineFactors( unsigned int x, unsigned int *factors ) |
306 |
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{ |
307 |
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register unsigned int *ptr; |
308 |
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register unsigned int half; |
309 |
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register unsigned int i; |
310 |
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311 |
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half = x/2; |
312 |
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ptr = factors; |
313 |
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for( i=1; i<MAXPRIMES; i++ ) |
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{ |
315 |
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if( (x%primes[i]) == 0 ) |
316 |
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*ptr++ = primes[i]; |
317 |
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if( (unsigned int)(primes[i]) >= half ) |
318 |
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return ptr-factors; |
319 |
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} |
320 |
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321 |
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for( i=primes[MAXPRIMES-1]+2; i<=half; i+=2 ) |
322 |
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if( IsOddPrime(i) && ((x%i)==0) ) |
323 |
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*ptr++ = i; |
324 |
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return ptr-factors; |
325 |
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} |
326 |
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327 |
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static unsigned int DetermineIncrement( unsigned int m ) |
328 |
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{ |
329 |
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register unsigned int hi,lo; |
330 |
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register unsigned int half; |
331 |
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register unsigned int i; |
332 |
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333 |
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/* 1/2 + sqrt(3)/6 */ |
334 |
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hi = (int)floor(0.7886751345948*m+0.5); |
335 |
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if( RelativelyPrime(m,hi) ) |
336 |
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return hi; |
337 |
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338 |
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/* 1/2 - sqrt(3)/6 */ |
339 |
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lo = (int)floor(0.2113248654052*m+0.5); |
340 |
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if( RelativelyPrime(m,lo) ) |
341 |
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return lo; |
342 |
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343 |
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half = m/2; |
344 |
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for( i=1; i<half; i++ ) |
345 |
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{ |
346 |
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if( RelativelyPrime(m,hi+i) ) |
347 |
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return hi+i; |
348 |
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if( RelativelyPrime(m,hi-i) ) |
349 |
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return hi-i; |
350 |
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if( RelativelyPrime(m,lo+i) ) |
351 |
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return lo+i; |
352 |
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if( RelativelyPrime(m,lo-i) ) |
353 |
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return lo-i; |
354 |
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} |
355 |
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return 1; |
356 |
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} |
357 |
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358 |
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int DetermineSequence( unsigned int m, unsigned int *pm, |
359 |
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unsigned int *pa, |
360 |
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unsigned int *pc ) |
361 |
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{ |
362 |
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auto unsigned int fact[MAXFACT]; |
363 |
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register unsigned int a=0, c; |
364 |
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register unsigned int b; |
365 |
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register int pot,best; |
366 |
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register int count; |
367 |
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register int flag; |
368 |
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register int i; |
369 |
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|
370 |
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do |
371 |
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{ |
372 |
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best = 0; |
373 |
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374 |
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count = DetermineFactors(m,fact); |
375 |
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if( (m&3) == 0 ) |
376 |
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fact[0] = 4; |
377 |
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378 |
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#ifdef DEBUG |
379 |
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380 |
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printf("factors(%d):",m); |
381 |
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#endif |
382 |
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383 |
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if( count ) |
384 |
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{ |
385 |
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#ifdef DEBUG |
386 |
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printf("%u",fact[0]); |
387 |
|
|
for( i=1; i<count; i++ ) |
388 |
|
|
printf(",%u",fact[i]); |
389 |
|
|
#endif |
390 |
|
|
|
391 |
|
|
for( b=m-2; b>0; b-- ) |
392 |
|
|
{ |
393 |
|
|
flag = True; |
394 |
|
|
for( i=0; i<count; i++ ) |
395 |
|
|
if( b%fact[i] ) |
396 |
|
|
{ |
397 |
|
|
flag = False; |
398 |
|
|
break; |
399 |
|
|
} |
400 |
|
|
|
401 |
|
|
if( flag ) |
402 |
|
|
{ |
403 |
|
|
pot = DeterminePotency(m,b+1); |
404 |
|
|
if( pot > best ) |
405 |
|
|
{ |
406 |
|
|
best = pot; |
407 |
|
|
a = b+1; |
408 |
|
|
} |
409 |
|
|
} |
410 |
|
|
} |
411 |
|
|
|
412 |
|
|
#ifdef DEBUG |
413 |
|
|
if( best ) |
414 |
|
|
printf(" [%d]",best); |
415 |
|
|
#endif |
416 |
|
|
|
417 |
|
|
} |
418 |
|
|
#ifdef DEBUG |
419 |
|
|
printf("\n"); |
420 |
|
|
#endif |
421 |
|
|
|
422 |
|
|
m++; |
423 |
|
|
} |
424 |
|
|
while( best < 3 ); |
425 |
|
|
m--; |
426 |
|
|
|
427 |
|
|
c = DetermineIncrement(m); |
428 |
|
|
|
429 |
|
|
*pm = m; |
430 |
|
|
*pa = a; |
431 |
|
|
*pc = c; |
432 |
|
|
return best; |
433 |
|
|
} |
434 |
|
|
|
435 |
|
|
|
436 |
|
|
void GenerateSequence( unsigned int p, unsigned int m, |
437 |
|
|
unsigned int a, unsigned int c ) |
438 |
|
|
{ |
439 |
|
|
register unsigned int i; |
440 |
|
|
register unsigned int x; |
441 |
|
|
auto DoubleType d; |
442 |
|
|
|
443 |
|
|
x = 0; /* seed */ |
444 |
|
|
for( i=0; i<p; i++ ) |
445 |
|
|
{ |
446 |
|
|
printf("%u\n",x); |
447 |
|
|
|
448 |
|
|
do |
449 |
|
|
{ |
450 |
|
|
DoubleMultiply(a,x,&d); |
451 |
|
|
DoubleAdd(&d,c); |
452 |
|
|
x = DoubleModulus(&d,m); |
453 |
|
|
} |
454 |
|
|
while( x >= p ); |
455 |
|
|
} |
456 |
|
|
} |
457 |
|
|
|
458 |
|
|
//********************************************** |
459 |
|
|
//***** Member functions from Random class ***** |
460 |
|
|
//********************************************** |
461 |
|
|
|
462 |
|
|
OBRandom::OBRandom(bool useSysRand) |
463 |
|
|
{ |
464 |
|
|
|
465 |
|
|
this->OBRandomUseSysRand= useSysRand; |
466 |
|
|
p = 70092; |
467 |
|
|
DetermineSequence(p,&m,&a,&c); |
468 |
|
|
x = 0; /* seed */ |
469 |
|
|
} |
470 |
|
|
|
471 |
|
|
int OBRandom::NextInt() |
472 |
|
|
{ |
473 |
|
|
if (OBRandomUseSysRand) |
474 |
|
|
{ |
475 |
|
|
return(rand()); |
476 |
|
|
} |
477 |
|
|
do |
478 |
|
|
{ |
479 |
|
|
DoubleMultiply(a,x,&d); |
480 |
|
|
DoubleAdd(&d,c); |
481 |
|
|
x = DoubleModulus(&d,m); |
482 |
|
|
} |
483 |
|
|
while( x >= p ); |
484 |
|
|
|
485 |
|
|
return(x); |
486 |
|
|
} |
487 |
|
|
|
488 |
|
|
double OBRandom::NextFloat() |
489 |
|
|
{ |
490 |
|
|
|
491 |
|
|
if (OBRandomUseSysRand) |
492 |
|
|
{ |
493 |
|
|
return(double(rand())/double(RAND_MAX)); |
494 |
|
|
} |
495 |
|
|
do |
496 |
|
|
{ |
497 |
|
|
DoubleMultiply(a,x,&d); |
498 |
|
|
DoubleAdd(&d,c); |
499 |
|
|
x = DoubleModulus(&d,m); |
500 |
|
|
} |
501 |
|
|
while( x >= p ); |
502 |
|
|
|
503 |
|
|
return((double)x/p); |
504 |
|
|
} |
505 |
|
|
|
506 |
|
|
void OBRandom::TimeSeed() |
507 |
|
|
{ |
508 |
|
|
#ifdef WIN32 |
509 |
|
|
// for VC++ do it this way |
510 |
|
|
time_t ltime; |
511 |
|
|
time(<ime); |
512 |
|
|
const long secs= long(ltime); |
513 |
|
|
x= secs % p; |
514 |
|
|
srand( (unsigned)time( NULL ) ); |
515 |
|
|
#else |
516 |
|
|
|
517 |
|
|
timeval time; |
518 |
|
|
gettimeofday(&time,(struct timezone *)NULL); |
519 |
|
|
x = (time.tv_usec%p); |
520 |
|
|
srand( x ); |
521 |
|
|
#ifdef HAVE_SRANDDEV |
522 |
|
|
sranddev(); |
523 |
|
|
#endif |
524 |
|
|
|
525 |
|
|
#endif |
526 |
|
|
} |
527 |
|
|
|
528 |
|
|
} //end namespace OpenBabel |
529 |
|
|
|
530 |
|
|
//! \file rand.cpp |
531 |
|
|
//! \brief Pseudo random number generator. |