src/openbabel/oberror.cpp

/**********************************************************************
oberror.cpp - Handle error messages.
 
Copyright (C) 2002 by Stefan Kebekus
Some portions Copyright (C) 2002-2005 by Geoffrey R. Hutchison
 
This file is part of the Open Babel project.
For more information, see <http://openbabel.sourceforge.net/>
 
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation version 2 of the License.
 
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
General Public License for more details.
***********************************************************************/

#include "config.h"

#if HAVE_IOSTREAM
#include <iostream>
#elif HAVE_IOSTREAM_H
#include <iostream.h>
#endif
#include <string>

#include "oberror.hpp"

using namespace std;

namespace OpenBabel
{

  OBMessageHandler obErrorLog;

OBError::OBError( const string &method, 
                  const string &errorMsg, 
                  const string &explanation,
                  const string &possibleCause,
                  const string &suggestedRemedy,
                  const obMessageLevel level) :
  _method(method), _errorMsg(errorMsg), _explanation(explanation),
  _possibleCause(possibleCause), _suggestedRemedy(suggestedRemedy),
  _level(level)
{ }

string OBError::message() const
{
    string tmp = "==============================\n";

    if (_level == obError)
      tmp += "*** Open Babel Error ";
    else if (_level == obWarning)
      tmp += "*** Open Babel Warning ";
    else if (_level == obInfo)
      tmp += "*** Open Babel Information ";
    else if (_level == obAuditMsg)
      tmp += "*** Open Babel Audit Log ";
    else
      tmp += "*** Open Babel Debugging Message ";

    if (_method.length() != 0)
      {
        tmp += " in " + _method + string("\n  ");
      }
    tmp += _errorMsg + "\n";
    if (_explanation.size() != 0)
        tmp += "  " + _explanation + "\n";
    if (_possibleCause.size() != 0)
        tmp += "  Possible reason: " + _possibleCause + "\n";
    if (_suggestedRemedy.size() != 0)
        tmp += "  Suggestion: " + _suggestedRemedy + "\n";
    return tmp;
}


/** \class OBMessageHandler

 OBMessageHandler represents a configurable error system for Open Babel.

A global error log is defined by the Open Babel library for use of
internal code as well as code built on top of Open Babel. This class
allows flexible filtering based on urgency (defined by the
obMessageLevel type), an "audit log" of molecular changes, including
recall using the GetMessagesOfLevel method, etc.

The default is to only log and output errors of priority
obMessageLevel::obError or obMessageLevel::obWarning.

Long-running code may wish to set the size of the in-memory error log
using the StartLogging / StopLogging methods and
SetMaxLogEntries. Otherwise, the error log may easily fill up,
requiring large amounts of memory.

If you wish to divert error output to a different std::ostream (i.e.,
for graphical display, or a file log), use the SetOutputStream method
-- the default goes to the std::clog stream. Furthermore, some older
code uses std::cerr for direct error output, rather than the
ThrowError() methods in this class. To prevent this, you can turn on
"error wrapping" using the StartErrorWrap method -- this behavior is
turned off by default.

To make it easy to use the OBMessageHandler class and error logging
facilities, a global log is defined:

\code
EXTERN OBMessageHandler obErrorLog;
\endcode

Therefore, it is very easy to log errors:

\code
   if (atomIndex < 1 || atomIndex > mol.NumAtoms() )
    obErrorLog.ThrowError(__func__, "Requested Atom Out of Range", obDebug);
\endcode

or

\code
     stringstream errorMsg;
     errorMsg << " Could not parse line in type translation table types.txt -- incorect number of columns";
     errorMsg << " found " << vc.size() << " expected " << _ncols << ".";
     obErrorLog.ThrowError(__func__, errorMsg.str(), obInfo);
\endcode

The __func__ builtin is defined by many compilers (e.g., <a
href="http://gcc.gnu.org/">GCC</a>) but can be defined to an empty
string on some platforms without this compiler extension.

Output from the error log typically looks like:
\code
==============================
*** Open Babel Audit Log  in ReadChemObject
  OpenBabel::Read molecule Protein Data Bank format
==============================
*** Open Babel Information  in ParseConectRecord
  WARNING: Problems reading a PDB file
  Problems reading a CONECT record.
  According to the PDB specification,
  the record should have 70 columns, but OpenBabel found 61 columns.
\endcode

**/

OBMessageHandler::OBMessageHandler() :
  _outputLevel(obWarning), _outputStream(&clog), _logging(true), _maxEntries(100)
{
  //  StartErrorWrap(); // (don't turn on error wrapping by default)
}

OBMessageHandler::~OBMessageHandler()
{ 
  StopErrorWrap();

  // free the internal filter streambuf
  if (_filterStreamBuf != NULL)
    delete _filterStreamBuf;
}
    
void OBMessageHandler::ThrowError(OBError err)
{
  _messageList.push_back(err);
  if (_maxEntries != 0 && _messageList.size() > _maxEntries)
    _messageList.pop_front();
  
  if (_logging && err.GetLevel() <= _outputLevel)
    {
      *_outputStream << err;
    }
}

void OBMessageHandler::ThrowError(const std::string &method, 
                                  const std::string &errorMsg,
                                  obMessageLevel level)
{
  if (errorMsg.length() > 1)
    {
      OBError err(method, errorMsg, "", "", "", level);
      ThrowError(err);
    }
}

std::vector<std::string> OBMessageHandler::GetMessagesOfLevel(const obMessageLevel level)
{
  vector<string> results;
  deque<OBError>::iterator i;
  OBError error;

  for (i = _messageList.begin(); i != _messageList.end(); i++)
    {
      error = (*i);
      if (error.GetLevel() == level)
        results.push_back( error.message() );
    }

  return results;
}

bool OBMessageHandler::StartErrorWrap()
{
  if (_inWrapStreamBuf != NULL)
    return true; // already wrapped cerr  -- don't go into loops!

  _inWrapStreamBuf = cerr.rdbuf();
 
  if (_filterStreamBuf == NULL)
    {
      _filterStreamBuf = new(obLogBuf);
    }

  cerr.rdbuf(_filterStreamBuf);
  return true;
}

bool OBMessageHandler::StopErrorWrap()
{
  if (_inWrapStreamBuf == NULL)
    return true; // never wrapped cerr

  // don't free the filter streambuf yet -- we might start wrapping later
  // it's freed in the dtor

  cerr.rdbuf(_inWrapStreamBuf);
  return true;
}

} // end namespace OpenBabel

//! \file oberror.cpp
//! \brief Handle error messages, warnings, notices, etc.
//!  Implements OBMessageHandler class.
Revision:	1081
Committed:	Thu Oct 19 20:49:05 2006 UTC (18 years, 6 months ago) by gezelter
File size:	6710 byte(s)
Log Message:	updated OpenBabel to version 2.0.2
#	Content
1	/**********************************************************************
2	oberror.cpp - Handle error messages.
3
4	Copyright (C) 2002 by Stefan Kebekus
5	Some portions Copyright (C) 2002-2005 by Geoffrey R. Hutchison
6
7	This file is part of the Open Babel project.
8	For more information, see <http://openbabel.sourceforge.net/>
9
10	This program is free software; you can redistribute it and/or modify
11	it under the terms of the GNU General Public License as published by
12	the Free Software Foundation version 2 of the License.
13
14	This program is distributed in the hope that it will be useful, but
15	WITHOUT ANY WARRANTY; without even the implied warranty of
16	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17	General Public License for more details.
18	***********************************************************************/
19
20	#include "config.h"
21
22	#if HAVE_IOSTREAM
23	#include <iostream>
24	#elif HAVE_IOSTREAM_H
25	#include <iostream.h>
26	#endif
27	#include <string>
28
29	#include "oberror.hpp"
30
31	using namespace std;
32
33	namespace OpenBabel
34	{
35
36	OBMessageHandler obErrorLog;
37
38	OBError::OBError( const string &method,
39	const string &errorMsg,
40	const string &explanation,
41	const string &possibleCause,
42	const string &suggestedRemedy,
43	const obMessageLevel level) :
44	_method(method), _errorMsg(errorMsg), _explanation(explanation),
45	_possibleCause(possibleCause), _suggestedRemedy(suggestedRemedy),
46	_level(level)
47	{ }
48
49	string OBError::message() const
50	{
51	string tmp = "==============================\n";
52
53	if (_level == obError)
54	tmp += "*** Open Babel Error ";
55	else if (_level == obWarning)
56	tmp += "*** Open Babel Warning ";
57	else if (_level == obInfo)
58	tmp += "*** Open Babel Information ";
59	else if (_level == obAuditMsg)
60	tmp += "*** Open Babel Audit Log ";
61	else
62	tmp += "*** Open Babel Debugging Message ";
63
64	if (_method.length() != 0)
65	{
66	tmp += " in " + _method + string("\n ");
67	}
68	tmp += _errorMsg + "\n";
69	if (_explanation.size() != 0)
70	tmp += " " + _explanation + "\n";
71	if (_possibleCause.size() != 0)
72	tmp += " Possible reason: " + _possibleCause + "\n";
73	if (_suggestedRemedy.size() != 0)
74	tmp += " Suggestion: " + _suggestedRemedy + "\n";
75	return tmp;
76	}
77
78
79	/** \class OBMessageHandler
80
81	OBMessageHandler represents a configurable error system for Open Babel.
82
83	A global error log is defined by the Open Babel library for use of
84	internal code as well as code built on top of Open Babel. This class
85	allows flexible filtering based on urgency (defined by the
86	obMessageLevel type), an "audit log" of molecular changes, including
87	recall using the GetMessagesOfLevel method, etc.
88
89	The default is to only log and output errors of priority
90	obMessageLevel::obError or obMessageLevel::obWarning.
91
92	Long-running code may wish to set the size of the in-memory error log
93	using the StartLogging / StopLogging methods and
94	SetMaxLogEntries. Otherwise, the error log may easily fill up,
95	requiring large amounts of memory.
96
97	If you wish to divert error output to a different std::ostream (i.e.,
98	for graphical display, or a file log), use the SetOutputStream method
99	-- the default goes to the std::clog stream. Furthermore, some older
100	code uses std::cerr for direct error output, rather than the
101	ThrowError() methods in this class. To prevent this, you can turn on
102	"error wrapping" using the StartErrorWrap method -- this behavior is
103	turned off by default.
104
105	To make it easy to use the OBMessageHandler class and error logging
106	facilities, a global log is defined:
107
108	\code
109	EXTERN OBMessageHandler obErrorLog;
110	\endcode
111
112	Therefore, it is very easy to log errors:
113
114	\code
115	if (atomIndex < 1 \|\| atomIndex > mol.NumAtoms() )
116	obErrorLog.ThrowError(__func__, "Requested Atom Out of Range", obDebug);
117	\endcode
118
119	or
120
121	\code
122	stringstream errorMsg;
123	errorMsg << " Could not parse line in type translation table types.txt -- incorect number of columns";
124	errorMsg << " found " << vc.size() << " expected " << _ncols << ".";
125	obErrorLog.ThrowError(__func__, errorMsg.str(), obInfo);
126	\endcode
127
128	The __func__ builtin is defined by many compilers (e.g., <a
129	href="http://gcc.gnu.org/">GCC</a>) but can be defined to an empty
130	string on some platforms without this compiler extension.
131
132	Output from the error log typically looks like:
133	\code
134	==============================
135	*** Open Babel Audit Log in ReadChemObject
136	OpenBabel::Read molecule Protein Data Bank format
137	==============================
138	*** Open Babel Information in ParseConectRecord
139	WARNING: Problems reading a PDB file
140	Problems reading a CONECT record.
141	According to the PDB specification,
142	the record should have 70 columns, but OpenBabel found 61 columns.
143	\endcode
144
145	**/
146
147	OBMessageHandler::OBMessageHandler() :
148	_outputLevel(obWarning), _outputStream(&clog), _logging(true), _maxEntries(100)
149	{
150	// StartErrorWrap(); // (don't turn on error wrapping by default)
151	}
152
153	OBMessageHandler::~OBMessageHandler()
154	{
155	StopErrorWrap();
156
157	// free the internal filter streambuf
158	if (_filterStreamBuf != NULL)
159	delete _filterStreamBuf;
160	}
161
162	void OBMessageHandler::ThrowError(OBError err)
163	{
164	_messageList.push_back(err);
165	if (_maxEntries != 0 && _messageList.size() > _maxEntries)
166	_messageList.pop_front();
167
168	if (_logging && err.GetLevel() <= _outputLevel)
169	{
170	*_outputStream << err;
171	}
172	}
173
174	void OBMessageHandler::ThrowError(const std::string &method,
175	const std::string &errorMsg,
176	obMessageLevel level)
177	{
178	if (errorMsg.length() > 1)
179	{
180	OBError err(method, errorMsg, "", "", "", level);
181	ThrowError(err);
182	}
183	}
184
185	std::vector<std::string> OBMessageHandler::GetMessagesOfLevel(const obMessageLevel level)
186	{
187	vector<string> results;
188	deque<OBError>::iterator i;
189	OBError error;
190
191	for (i = _messageList.begin(); i != _messageList.end(); i++)
192	{
193	error = (*i);
194	if (error.GetLevel() == level)
195	results.push_back( error.message() );
196	}
197
198	return results;
199	}
200
201	bool OBMessageHandler::StartErrorWrap()
202	{
203	if (_inWrapStreamBuf != NULL)
204	return true; // already wrapped cerr -- don't go into loops!
205
206	_inWrapStreamBuf = cerr.rdbuf();
207
208	if (_filterStreamBuf == NULL)
209	{
210	_filterStreamBuf = new(obLogBuf);
211	}
212
213	cerr.rdbuf(_filterStreamBuf);
214	return true;
215	}
216
217	bool OBMessageHandler::StopErrorWrap()
218	{
219	if (_inWrapStreamBuf == NULL)
220	return true; // never wrapped cerr
221
222	// don't free the filter streambuf yet -- we might start wrapping later
223	// it's freed in the dtor
224
225	cerr.rdbuf(_inWrapStreamBuf);
226	return true;
227	}
228
229	} // end namespace OpenBabel
230
231	//! \file oberror.cpp
232	//! \brief Handle error messages, warnings, notices, etc.
233	//! Implements OBMessageHandler class.