--- branches/development/src/nonbonded/Electrostatic.cpp 2012/05/24 01:48:29 1720 +++ branches/development/src/nonbonded/Electrostatic.cpp 2012/05/24 20:59:54 1723 @@ -217,7 +217,6 @@ namespace OpenMD { addType(at); } - cutoffRadius2_ = cutoffRadius_ * cutoffRadius_; rcuti_ = 1.0 / cutoffRadius_; rcuti2_ = rcuti_ * rcuti_; @@ -284,6 +283,7 @@ namespace OpenMD { electrostaticAtomData.is_Dipole = false; electrostaticAtomData.is_SplitDipole = false; electrostaticAtomData.is_Quadrupole = false; + electrostaticAtomData.is_Fluctuating = false; FixedChargeAdapter fca = FixedChargeAdapter(atomType); @@ -364,6 +364,7 @@ namespace OpenMD { rval = RealType(i) * dr; rvals.push_back(rval); J1vals.push_back( sSTOCoulInt( a, b, m, n, rval * PhysicalConstants::angstromsToBohr ) ); + // may not be necessary if Slater coulomb integral is symmetric J2vals.push_back( sSTOCoulInt( b, a, n, m, rval * PhysicalConstants::angstromsToBohr ) ); } @@ -446,7 +447,12 @@ namespace OpenMD { Vector3d indirect_dVdr(V3Zero); Vector3d indirect_duduz_i(V3Zero), indirect_duduz_j(V3Zero); + RealType coulInt, vFluc1(0.0), vFluc2(0.0); pair res; + + // splines for coulomb integrals + CubicSpline* J1; + CubicSpline* J2; if (!initialized_) initialize(); @@ -464,14 +470,21 @@ namespace OpenMD { bool i_is_Dipole = data1.is_Dipole; bool i_is_SplitDipole = data1.is_SplitDipole; bool i_is_Quadrupole = data1.is_Quadrupole; + bool i_is_Fluctuating = data1.is_Fluctuating; bool j_is_Charge = data2.is_Charge; bool j_is_Dipole = data2.is_Dipole; bool j_is_SplitDipole = data2.is_SplitDipole; bool j_is_Quadrupole = data2.is_Quadrupole; + bool j_is_Fluctuating = data2.is_Fluctuating; if (i_is_Charge) { q_i = data1.fixedCharge; + + if (i_is_Fluctuating) { + q_i += *(idat.flucQ1); + } + if (idat.excluded) { *(idat.skippedCharge2) += q_i; } @@ -510,6 +523,10 @@ namespace OpenMD { if (j_is_Charge) { q_j = data2.fixedCharge; + + if (i_is_Fluctuating) + q_j += *(idat.flucQ2); + if (idat.excluded) { *(idat.skippedCharge1) += q_j; } @@ -547,6 +564,11 @@ namespace OpenMD { duduz_j = V3Zero; } + if (i_is_Fluctuating && j_is_Fluctuating) { + J1 = Jij[idat.atypes]; + J2 = Jij[make_pair(idat.atypes.second, idat.atypes.first)]; + } + epot = 0.0; dVdr = V3Zero; @@ -598,12 +620,38 @@ namespace OpenMD { vterm = preVal * riji * erfcVal; dudr = - *(idat.sw) * preVal * c2; - + } - + vpair += vterm; epot += *(idat.sw) * vterm; - dVdr += dudr * rhat; + dVdr += dudr * rhat; + + if (i_is_Fluctuating) { + if (idat.excluded) { + // vFluc1 is the difference between the direct coulomb integral + // and the normal 1/r-like interaction between point charges. + coulInt = J1->getValueAt( *(idat.rij) ); + vFluc1 = pre11_ * coulInt * q_i * q_j - (*(idat.sw) * vterm); + } else { + vFluc1 = 0.0; + } + *(idat.dVdFQ1) += ( *(idat.sw) * vterm + vFluc1 ) / q_i; + } + + if (j_is_Fluctuating) { + if (idat.excluded) { + // vFluc2 is the difference between the direct coulomb integral + // and the normal 1/r-like interaction between point charges. + coulInt = J2->getValueAt( *(idat.rij) ); + vFluc2 = pre11_ * coulInt * q_i * q_j - (*(idat.sw) * vterm); + } else { + vFluc2 = 0.0; + } + *(idat.dVdFQ2) += ( *(idat.sw) * vterm + vFluc2 ) / q_j; + } + + } if (j_is_Dipole) { @@ -676,6 +724,9 @@ namespace OpenMD { duduz_j += -preSw * pot_term * rhat; } + if (i_is_Fluctuating) { + *(idat.dVdFQ1) += ( *(idat.sw) * vterm ) / q_i; + } } if (j_is_Quadrupole) { @@ -728,6 +779,10 @@ namespace OpenMD { dudux_j += preSw * qxx_j * cx_j * rhatdot2; duduy_j += preSw * qyy_j * cy_j * rhatdot2; duduz_j += preSw * qzz_j * cz_j * rhatdot2; + if (i_is_Fluctuating) { + *(idat.dVdFQ1) += ( *(idat.sw) * vterm ) / q_i; + } + } } @@ -803,7 +858,12 @@ namespace OpenMD { // calculate derivatives for the forces and torques dVdr += preSw * (uz_i * c2ri - ct_i * rhat * sc2 * c3); duduz_i += preSw * pot_term * rhat; + } + + if (j_is_Fluctuating) { + *(idat.dVdFQ2) += ( *(idat.sw) * vterm ) / q_j; } + } if (j_is_Dipole) { @@ -954,6 +1014,11 @@ namespace OpenMD { dudux_i += preSw * qxx_i * cx_i * rhatdot2; duduy_i += preSw * qyy_i * cy_i * rhatdot2; duduz_i += preSw * qzz_i * cz_i * rhatdot2; + + if (j_is_Fluctuating) { + *(idat.dVdFQ2) += ( *(idat.sw) * vterm ) / q_j; + } + } } @@ -992,7 +1057,6 @@ namespace OpenMD { *(idat.t2) -= cross(uz_j, indirect_duduz_j); } - return; }