--- branches/development/src/nonbonded/Electrostatic.cpp 2011/08/18 20:18:19 1613 +++ branches/development/src/nonbonded/Electrostatic.cpp 2011/11/22 20:38:56 1665 @@ -36,7 +36,8 @@ * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). * [2] Fennell & Gezelter, J. Chem. Phys. 124 234104 (2006). * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). - * [4] Vardeman & Gezelter, in progress (2009). + * [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). + * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). */ #include @@ -64,6 +65,7 @@ namespace OpenMD { Globals* simParams_ = info_->getSimParams(); summationMap_["HARD"] = esm_HARD; + summationMap_["NONE"] = esm_HARD; summationMap_["SWITCHING_FUNCTION"] = esm_SWITCHING_FUNCTION; summationMap_["SHIFTED_POTENTIAL"] = esm_SHIFTED_POTENTIAL; summationMap_["SHIFTED_FORCE"] = esm_SHIFTED_FORCE; @@ -116,7 +118,7 @@ namespace OpenMD { sprintf( painCave.errMsg, "Electrostatic::initialize: Unknown electrostaticSummationMethod.\n" "\t(Input file specified %s .)\n" - "\telectrostaticSummationMethod must be one of: \"none\",\n" + "\telectrostaticSummationMethod must be one of: \"hard\",\n" "\t\"shifted_potential\", \"shifted_force\", or \n" "\t\"reaction_field\".\n", myMethod.c_str() ); painCave.isFatal = 1; @@ -583,9 +585,13 @@ namespace OpenMD { if (j_is_Charge) { if (screeningMethod_ == DAMPED) { // assemble the damping variables - res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); - erfcVal = res.first; - derfcVal = res.second; + //res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); + //erfcVal = res.first; + //derfcVal = res.second; + + erfcVal = erfc(dampingAlpha_ * *(idat.rij)); + derfcVal = - alphaPi_ * exp(-alpha2_ * *(idat.r2)); + c1 = erfcVal * riji; c2 = (-derfcVal + c1) * riji; } else { @@ -672,9 +678,11 @@ namespace OpenMD { if (screeningMethod_ == DAMPED) { // assemble the damping variables - res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); - erfcVal = res.first; - derfcVal = res.second; + //res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); + //erfcVal = res.first; + //derfcVal = res.second; + erfcVal = erfc(dampingAlpha_ * *(idat.rij)); + derfcVal = - alphaPi_ * exp(-alpha2_ * *(idat.r2)); c1 = erfcVal * ri; c2 = (-derfcVal + c1) * ri; c3 = -2.0 * derfcVal * alpha2_ + 3.0 * c2 * ri; @@ -709,9 +717,11 @@ namespace OpenMD { if (screeningMethod_ == DAMPED) { // assemble the damping variables - res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); - erfcVal = res.first; - derfcVal = res.second; + //res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); + //erfcVal = res.first; + //derfcVal = res.second; + erfcVal = erfc(dampingAlpha_ * *(idat.rij)); + derfcVal = - alphaPi_ * exp(-alpha2_ * *(idat.r2)); c1 = erfcVal * riji; c2 = (-derfcVal + c1) * riji; c3 = -2.0 * derfcVal * alpha2_ + 3.0 * c2 * riji; @@ -798,9 +808,11 @@ namespace OpenMD { if (screeningMethod_ == DAMPED) { // assemble the damping variables - res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); - erfcVal = res.first; - derfcVal = res.second; + //res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); + //erfcVal = res.first; + //derfcVal = res.second; + erfcVal = erfc(dampingAlpha_ * *(idat.rij)); + derfcVal = - alphaPi_ * exp(-alpha2_ * *(idat.r2)); c1 = erfcVal * ri; c2 = (-derfcVal + c1) * ri; c3 = -2.0 * derfcVal * alpha2_ + 3.0 * c2 * ri; @@ -877,9 +889,11 @@ namespace OpenMD { } if (screeningMethod_ == DAMPED) { // assemble damping variables - res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); - erfcVal = res.first; - derfcVal = res.second; + //res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); + //erfcVal = res.first; + //derfcVal = res.second; + erfcVal = erfc(dampingAlpha_ * *(idat.rij)); + derfcVal = - alphaPi_ * exp(-alpha2_ * *(idat.r2)); c1 = erfcVal * ri; c2 = (-derfcVal + c1) * ri; c3 = -2.0 * derfcVal * alpha2_ + 3.0 * c2 * ri; @@ -928,9 +942,11 @@ namespace OpenMD { if (screeningMethod_ == DAMPED) { // assemble the damping variables - res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); - erfcVal = res.first; - derfcVal = res.second; + //res = erfcSpline_->getValueAndDerivativeAt( *(idat.rij) ); + //erfcVal = res.first; + //derfcVal = res.second; + erfcVal = erfc(dampingAlpha_ * *(idat.rij)); + derfcVal = - alphaPi_ * exp(-alpha2_ * *(idat.r2)); c1 = erfcVal * riji; c2 = (-derfcVal + c1) * riji; c3 = -2.0 * derfcVal * alpha2_ + 3.0 * c2 * riji; @@ -995,6 +1011,7 @@ namespace OpenMD { // only accumulate the forces and torques resulting from the // indirect reaction field terms. + *(idat.vpair) += indirect_vpair; (*(idat.pot))[ELECTROSTATIC_FAMILY] += indirect_Pot; *(idat.f1) += indirect_dVdr;